Teams: GalaxyProject SARS-CoV-2
Organizations: Earlham Institute

Expertise: Bioinformatics
Tools: Galaxy
Research Director @ INRAe
Stable
This workflow has been created as part of Demonstrator 6 of EOSC-Life WP3 and is focused on reusing publicly available RNAi screens to gain insights into the nucleolus biology. The workflow downloads images from the Image Data Resource (IDR), performs object segmentation (of nuclei and nucleoli) and feature extraction of the images and objects identified.
Work-in-progress
Abstract CWL Automatically generated from the Galaxy workflow file: Workflow with Copernicus Essential Climate Variable - select and plot
Stable
Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
Stable
Detects SNPs and INDELs using VARSCAN2.