EuroScienceGateway will leverage a distributed computing network across 13 European countries, accessible via 6 national, user-friendly web portals, facilitating access to compute and storage infrastructures across Europe as well as to data, tools, workflows and services that can be customized to suit researchers’ needs.EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research, contributing an innovative and customizable service for EOSC that enables operational open and FAIR data and data processing, empowering European researchers to embrace the new digital age of science.
Space: ELIXIR
SEEK ID: https://workflowhub.eu/projects/166
Funding codes:- https://doi.org/10.3030/101057388
Public web page: https://eurosciencegateway.eu/
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team start date: 1st Oct 2022
Team end date: 31st Aug 2025
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- People (14)
- Spaces (1)
- Organizations (8)
- SOPs (1)
- Presentations (1)
- Workflows (11+1)
- Collections (1)
Teams: BioBB Building Blocks, EuroScienceGateway
Organizations: Barcelona Supercomputing Center (BSC-CNS)
Teams: IBISBA Workflows, nf-core viralrecon, Testing, Defragmentation TS, EuroScienceGateway, ELIXIR Training
Organizations: The University of Manchester
Teams: GalaxyProject SARS-CoV-2, usegalaxy.be workflows, EuroScienceGateway
Organizations: ELIXIR Belgium, VIB
https://orcid.org/0000-0001-6565-5145Teams: ODA, EuroScienceGateway
Expertise: High Performance Computing, Scientific workflow developement, Software Engineering, astronomy
Tools: Galaxy, Jupyter notebook, Python, Workflows, Git
Teams: IBISBA Workflows, GalaxyProject SARS-CoV-2, BioBB Building Blocks, Common Workflow Language (CWL) community, BioExcel Best Practice Guides, Specimen Data Refinery, FAIR Computational Workflows, Vertebrate Genomes Pipelines in Galaxy, TRE-FX, EuroScienceGateway, Biodiversity Genomics Europe (general), BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection, BY-COVID (general), BioDT additional pipelines, BioDT Use Case 4.1.1.1 Biodiversity dynamics, BioDT Use Case 4.1.2.2 DNA detected biodiversity, poorly known habitats, BioDT Use Case 4.1.2.1 Crop wild relatives and genetic resources for food security, BioDT Use Case 4.1.3.1 Invasive species, BioDT Use Case 4.1.3.2 Endangered species, BioDT Use Case 4.1.4.1 Disease outbreaks, BioDT Use Case 4.1.4.2 Pollinators, BioDT Use Case 4.1.1.2 Ecosystem services, ELIXIR Training, ELIXIR Tools platform
Organizations: The University of Manchester, ELIXIR-UK
https://orcid.org/0000-0001-9842-9718ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers.
The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...
Teams: ELIXIR Training, FAIR Computational Workflows, EuroScienceGateway, BY-COVID (general), ELIXIR Tools platform, ELIXIR Metabolomics
Web page: https://elixir-europe.org/
The EuroScienceGateway project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:
- To give visibility to the workflows created by the project and by the different networks and communities within the project
- To give visibility to the workflows used by project that were created
- To share workflows across the project, within project networks and externally
- To credit and cite the people making the workflows and the ...
Creators: Stian Soiland-Reyes, Carole Goble, Finn Bacall
Submitter: Stian Soiland-Reyes
To make your workflow FAIR (Findable, Accessible, Interoperable, Reusable), register it in WorkflowHub, a workflow registry with rich metadata capture for workflow discovery and sharing, and value-added services, for workflow testing (LifeMonitor), execution and publication.
The EuroScienceGateway, Biodiversity Genomics Europe and BioDT projects will use WorkflowHub to organise, share and publish their workflows.
This was Ask Me Anything and Bring Your Own Workflow (AMA & BYOW) specifically ...
Creators: Nick Juty, Finn Bacall
Submitter: Stian Soiland-Reyes
This workflow provides a calculaiton of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) ...
The tool provides a calculation of the power spectrum of Stochastic Gravitational Wave Backgorund (SGWB) from a first-order cosmological phase transition based on the parameterisations of Roper Pol et al. (2023). The power spectrum includes two components: from the sound waves excited by collisions of bubbles of the new phase and from the turbulence that is induced by these collisions.
The cosmological epoch of the phase transition is described by the temperature, T_star and by the number(s) of ...
Type: Galaxy
Creators: Andrii Neronov, Théo Boyer, Denys Savchenko, Volodymyr Savchenko
Submitter: Denys Savchenko
Protype demonstrator of a workflow reducing HESS and INTEGRAL/SPI-ACS data to common Light Curve format and combining the lightcurves into a multi-wavelength observation.
Type: Galaxy
Creators: Volodymyr Savchenko, Denys Savchenko, Andrii Neronov
Submitter: Volodymyr Savchenko
Refining Genome Annotations with Apollo
NDVI data with OpenEO to time series visualisation with HoloViz
Calculating and visualizing marine biodiversity indicators
Finding potential muon stopping sites in crystalline copper
Type: Galaxy
Creators: Leandro Liborio, Muon Spectroscopy Computational Project
Submitter: Paul De Geest
From Copernicus Sentinel 5P data to panoply visualization of volcanic activity impact to atmosphere
Functional annotation of protein sequences
Structural and functional genome annotation with Funannotate
Masking repeats in a genome using RepeatMasker
Collection of workflows used or developed by the EuroScienceGateway project.