DIA_lib_OSW 1.0
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Run on GalaxyDIA library Training HEK Ecoli data
Associated Tutorial
This workflows is part of the tutorial Library Generation for DIA Analysis, available in the GTN
Thanks to...
Tutorial Author(s): Matthias Fahrner, Melanie Föll
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| DDA_data collection | #main/DDA_data collection | n/a |
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| FASTA collection | #main/FASTA collection | n/a |
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| HEK_Ecoli_exp_design.txt | #main/HEK_Ecoli_exp_design.txt | n/a |
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| iRTassays.tsv | #main/iRTassays.tsv | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | MaxQuant | toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3 |
| 5 | Filter | Filter1 |
| 6 | Filter | Filter1 |
| 7 | diapysef library generation | toolshed.g2.bx.psu.edu/repos/galaxyp/diapysef/diapysef/0.3.5.0 |
| 8 | OpenSwathAssayGenerator | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathassaygenerator/OpenSwathAssayGenerator/2.5+galaxy0 |
| 9 | OpenSwathDecoyGenerator | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathdecoygenerator/OpenSwathDecoyGenerator/2.5+galaxy0 |
| 10 | TargetedFileConverter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_targetedfileconverter/TargetedFileConverter/2.5+galaxy0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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| _anonymous_output_17 | #main/_anonymous_output_17 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 40 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:52
Tags AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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