MuSiC: Deconvolution 3.0
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Run on GalaxyWorkflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.
Associated Tutorial
This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
- Uses Galaxy Workflow Comments
Thanks to...
Workflow Author(s): Morgan Howells
Tutorial Author(s): Mehmet Tekman, Wendi Bacon
Tutorial Contributor(s): Morgan Howells, Helena Rasche, Mehmet Tekman, Saskia Hiltemann, Wendi Bacon, Björn Grüning
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Bulk RNA Assay Tabular | Bulk RNA Assay Tabular | n/a |
|
| Bulk RNA Phenotype Tabular | Bulk RNA Phenotype Tabular | n/a |
|
| Cell Types List | Cell Types List | n/a |
|
| scRNA Assay Tabular | scRNA Assay Tabular | n/a |
|
| scRNA Phenotype Tabular | scRNA Phenotype Tabular | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Construct Expression Set Object | toolshed.g2.bx.psu.edu/repos/bgruening/music_construct_eset/music_construct_eset/0.1.1+galaxy4 |
| 6 | Construct Expression Set Object | toolshed.g2.bx.psu.edu/repos/bgruening/music_construct_eset/music_construct_eset/0.1.1+galaxy4 |
| 7 | Extract Cell Types | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 8 | Extract General Info (scrna) | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 9 | Extract General Info (Bulk) | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 10 | Music: Estimate Cell Proportions | toolshed.g2.bx.psu.edu/repos/bgruening/music_deconvolution/music_deconvolution/0.1.1+galaxy4 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | _anonymous_output_1 | n/a |
|
| _anonymous_output_2 | _anonymous_output_2 | n/a |
|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
Version History
master
Creators and Submitter
Views: 236 Downloads: 34 Runs: 0
Created: 2nd Jun 2025 at 10:58
AttributionsNone
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Organizations: Galaxy
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