Assembly with Flye - upgraded
2.0

Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN

Features

Thanks to...

Workflow Author(s): Anna Syme

Tutorial Author(s): Anna Syme

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
long reads long reads n/a
  • File

Steps

ID Name Description
1 Flye: assembly toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9.3+galaxy0
2 Fasta statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
3 Quast genome report toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1
4 Bandage image: Flye assembly toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4
5 Bar chart: show contig sizes barchart_gnuplot

Outputs

ID Name Description Type
Flye assembly on input dataset(s) (consensus) Flye assembly on input dataset(s) (consensus) n/a
  • File
Flye assembly on input dataset(s) (assembly_graph) Flye assembly on input dataset(s) (assembly_graph) n/a
  • File
Flye assembly on input dataset(s) (Graphical Fragment Assembly) Flye assembly on input dataset(s) (Graphical Fragment Assembly) n/a
  • File
Flye assembly on input dataset(s) (assembly_info) Flye assembly on input dataset(s) (assembly_info) n/a
  • File
Quast on input dataset(s): HTML report Quast on input dataset(s): HTML report n/a
  • File
Bandage Image on input dataset(s): Assembly Graph Image Bandage Image on input dataset(s): Assembly Graph Image n/a
  • File
Bar chart showing contig sizes Bar chart showing contig sizes n/a
  • File

Version History

2.0 (earliest) Created 2nd Jun 2025 at 11:00 by GTN Bot

Added/updated 4 files


Open master d46ba4c
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Created: 2nd Jun 2025 at 11:00

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