Workflow Type: Galaxy
Associated Tutorial
This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
ID | Name | Description | Type |
---|---|---|---|
Assembly to be polished | #main/Assembly to be polished | n/a |
|
Illumina reads, R1, in fastq.gz format | #main/Illumina reads, R1, in fastq.gz format | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | Minimap2 round 1: map reads to assembly | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
3 | Racon round 1: polish assembly | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
4 | Minimap2 round 2: map reads to assembly | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
5 | Racon round 2: polish assembly | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Assembly polished by short reads using Racon | #main/Assembly polished by short reads using Racon | n/a |
|
Version History

Creators
Not specifiedSubmitter
Discussion Channel
Activity
Views: 37 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 11:00

None