Workflow Methylation Seq 3.0
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Run on GalaxyDNA Methylation data analysis
Associated Tutorial
This workflows is part of the tutorial DNA Methylation data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Devon Ryan, Verena Moosmann
Tutorial Contributor(s): Pavankumar Videm, Wolfgang Maier, Saskia Hiltemann, Helena Rasche, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, William Durand, Björn Grüning, Niall Beard
Steps
| ID | Name | Description |
|---|---|---|
| 9 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 10 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
| 11 | bwameth | toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 |
| 12 | Replace column | toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 |
| 13 | metilene | toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1 |
| 14 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 15 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
| 16 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 17 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
| 18 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 19 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 |
| 20 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
| 21 | plotProfile | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 |
Version History
master
Creators and Submitter
Views: 42 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:58
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Teams: Galaxy Training Network
Organizations: Galaxy
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The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
