Workflow Methylation Seq
3.0

Workflow Type: Galaxy

DNA Methylation data analysis

Associated Tutorial

This workflows is part of the tutorial DNA Methylation data analysis, available in the GTN

Features

Thanks to...

Tutorial Author(s): Joachim Wolff, Devon Ryan, Verena Moosmann

Tutorial Contributor(s): Pavankumar Videm, Wolfgang Maier, Saskia Hiltemann, Helena Rasche, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, William Durand, Björn Grüning, Niall Beard

gtn star logo followed by the word workflows

Steps

ID Name Description
9 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68
10 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68
11 bwameth toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3
12 Replace column toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1
13 metilene toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1
14 MethylDackel toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0
15 MethylDackel toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0
16 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
17 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
18 computeMatrix toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0
19 Text reformatting toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0
20 computeMatrix toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0
21 plotProfile toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0

Version History

3.0 (earliest) Created 2nd Jun 2025 at 10:58 by GTN Bot

Added/updated 4 files


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Created: 2nd Jun 2025 at 10:58

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