Workflow Type: Galaxy
DNA Methylation data analysis
Associated Tutorial
This workflows is part of the tutorial DNA Methylation data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Joachim Wolff, Devon Ryan, Verena Moosmann
Tutorial Contributor(s): Pavankumar Videm, Wolfgang Maier, Saskia Hiltemann, Helena Rasche, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, William Durand, Björn Grüning, Niall Beard
Steps
ID | Name | Description |
---|---|---|
9 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
10 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.68 |
11 | bwameth | toolshed.g2.bx.psu.edu/repos/iuc/bwameth/bwameth/0.2.0.3 |
12 | Replace column | toolshed.g2.bx.psu.edu/repos/bgruening/replace_column_by_key_value_file/replace_column_with_key_value_file/0.1 |
13 | metilene | toolshed.g2.bx.psu.edu/repos/rnateam/metilene/metilene/0.2.6.1 |
14 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
15 | MethylDackel | toolshed.g2.bx.psu.edu/repos/bgruening/pileometh/pileometh/0.3.0 |
16 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
17 | Select last | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0 |
18 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
19 | Text reformatting | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.0 |
20 | computeMatrix | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0 |
21 | plotProfile | toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_profile/deeptools_plot_profile/2.5.1.1.0 |
Version History

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Views: 42 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:58


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