Simtext training workflow
1.0

Workflow Type: Galaxy

In this workflow the similarity among set of search queries (e.g. genes) is analyzed based on the associated vocabulary in PubMed. The last tool is an interactive tool that enables the inspection of the data.

Associated Tutorial

This workflows is part of the tutorial Text-mining with the SimText toolset, available in the GTN

Thanks to...

Workflow Author(s):

Tutorial Author(s): Marie Gramm, Dennis Lal group, Daniel Blankenberg

gtn star logo followed by the word workflows

Steps

ID Name Description
1 PubMed query toolshed.g2.bx.psu.edu/repos/iuc/pubmed_by_queries/pubmed_by_queries/0.0.2
2 PMIDs to PubTator toolshed.g2.bx.psu.edu/repos/iuc/pmids_to_pubtator_matrix/pmids_to_pubtator_matrix/0.0.2
3 simtext_app interactive_tool_simtext_app

Version History

1.0 (earliest) Created 2nd Jun 2025 at 11:00 by GTN Bot

Added/updated 4 files


Open master 33c4a6d
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
Activity

Views: 40   Downloads: 3   Runs: 0

Created: 2nd Jun 2025 at 11:00

help Attributions

None

Total size: 33.8 KB
Powered by
(v.1.17.0-main)
Copyright © 2008 - 2025 The University of Manchester and HITS gGmbH