2 items tagged with 'Hi-C'.
This workflow take as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file. The pairs are filtered for MAPQ and sorted by cooler to generate a tabix dataset. Cooler is used to generate a balanced cool file to the desired resolution.
Creator: Lucille Delisle
Submitter: WorkflowHub Bot
Created: 21st Jan 2023 at 03:01
Flashlite-Juicer is a PBS implementation of Juicer for University of Queensland's Flashlite HPC.
Infrastructure_deployment_metadata: FlashLite (QRISCloud)
Type: Shell Script
Creators: Tracy Chew, Rosemarie Sadsad, Nathaniel Butterworth
Submitter: Tracy Chew
Created: 18th Aug 2021 at 00:19, Last updated: 7th Sep 2021 at 07:26