WF1_Database_Generation_Workflow 1.0
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Run on GalaxyGenerating a large database and then reducing it to a compact database using Metanovo
Associated Tutorial
This workflows is part of the tutorial Clinical Metaproteomics 1: Database-Generation, available in the GTN
Thanks to...
Workflow Author(s): Subina Mehta
Tutorial Author(s): Subina Mehta, Katherine Do, Dechen Bhuming
Tutorial Contributor(s): Pratik Jagtap, Timothy J. Griffin, Bérénice Batut, Helena Rasche, Saskia Hiltemann, Björn Grüning, Subina Mehta
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Contaminants (cRAP) Protein Database | #main/Contaminants (cRAP) Protein Database | n/a |
|
| HUMAN SwissProt Protein Database | #main/HUMAN SwissProt Protein Database | n/a |
|
| Input MGF files (Dataset Collection) | #main/Input MGF files (Dataset Collection) | n/a |
|
| Species_UniProt_FASTA | #main/Species_UniProt_FASTA | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 4 | Human UniProt Microbial Proteins cRAP for MetaNovo | toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 |
| 5 | MetaNovo | toolshed.g2.bx.psu.edu/repos/galaxyp/metanovo/metanovo/1.9.4+galaxy4 |
| 6 | FASTA Merge Files and Filter Unique Sequences | toolshed.g2.bx.psu.edu/repos/galaxyp/fasta_merge_files_and_filter_unique_sequences/fasta_merge_files_and_filter_unique_sequences/1.2.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Human UniProt Microbial Proteins (from MetaNovo) and cRAP | #main/Human UniProt Microbial Proteins (from MetaNovo) and cRAP | n/a |
|
| Human UniProt Microbial Proteins cRAP for MetaNovo | #main/Human UniProt Microbial Proteins cRAP for MetaNovo | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
master
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Views: 220 Downloads: 30 Runs: 0
Created: 2nd Jun 2025 at 10:54
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