A porting of the Trinity RNA assembly pipeline, https://trinityrnaseq.github.io, that uses Nextflow to handle the underlying sub-tasks.
This enables additional capabilities to better use HPC resources, such as packing of tasks to fill up nodes and use of node-local disks to improve I/O.
By design, the pipeline separates the workflow logic (main file) and the cluster-specific configuration (config files), improving portability.
Based on a pipeline by Sydney Informatics Hub:
Virus genome assembly with Unicycler and Spades,
The 2 assemblers works in parallel. The graph visualization is made with Bandage.
Type: Common Workflow Language
Submitter: francois moreews