Workflow Type: Galaxy
Open
Total size: 61.7 KB
Work-in-progress
Performs Long Read assembly using PacBio data and Hifiasm. Part of VGP assembly pipeline. This workflow generate a phased assembly.
Could not render the workflow diagram.
Inputs
ID | Name | Description | Type |
---|---|---|---|
HiC forward reads | n/a | n/a |
|
HiC reverse reads | n/a | n/a |
|
Meryl Database | n/a | Database Generated from the "Meryl database creation" workflow. |
|
Pacbio Reads Collection | n/a | Collection of Long reads in fastq format. |
|
Steps
ID | Name | Description |
---|---|---|
10_Hifiasm | n/a | n/a |
11_Search in textfiles | n/a | n/a |
12_GFA to FASTA | n/a | n/a |
13_GFA to FASTA | n/a | n/a |
14_gfastats | n/a | n/a |
15_gfastats | n/a | n/a |
16_Replace Text | n/a | n/a |
17_Busco | n/a | n/a |
18_Merqury | n/a | n/a |
19_Busco | n/a | n/a |
20_Convert | n/a | n/a |
21_Cut | n/a | n/a |
22_Parse parameter value | n/a | n/a |
23_Quast | n/a | n/a |
24_Quast | n/a | n/a |
25_gfastats | n/a | n/a |
26_gfastats | n/a | n/a |
2_Input parameter | n/a | n/a |
3_Input parameter | n/a | n/a |
4_Input parameter | n/a | n/a |
7_Meryl | n/a | n/a |
8_Cutadapt | n/a | n/a |
9_GenomeScope | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 22:55 by Cristóbal Gallardo
Initial commit
Open
master
abcf2a9
Creators and Submitter
Creator
Submitter
Activity
Views: 3332 Downloads: 220 Runs: 0
Created: 5th Apr 2022 at 22:55
Attributions
None
Powered by
(v.1.16.0-main)
(v.1.16.0-main)
About WorkflowHub |
Acknowledgements |
Credits | Terms & Conditions
| Privacy Policy
| Cite us | Contact us
Copyright © 2008 - 2024
The University of Manchester and
HITS gGmbH