Ambarish Kumar
SEEK ID: https://workflowhub.eu/people/26
Location:
India
Expertise: Not specified
Tools: Not specified
ORCID: Not specified
Their tagsRelated items
CWL workflows related to virus genomics with focus on SARS-CoV-2.
Space: COVID-19 Biohackathon
Public web page: https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures https://covid19.galaxyproject.org
Space: COVID-19 Biohackathon
Public web page: https://github.com/galaxyproject/SARS-CoV-2
External Link
Download
Stable
Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
Stable
Alignment, assembly RNASEQ reads and annotation of generated transcripts.
Stable
Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.
Stable
Alignment, assembly and annotation of generated transcripts from RNASEQ reads.
Stable
Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in
This is a proposed standard operating procedure for genomic variant detection using SAMTools.
It is hoped to be effective and useful for getting SARS-CoV-2 genome variants.
It uses Illumina RNASEQ reads and genome sequence.
