Proteomics: MaxQuant workflow 6.0
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Download RO-Crate
Run on GalaxyLabel-free data analysis using MaxQuant
Associated Tutorial
This workflows is part of the tutorial Label-free data analysis using MaxQuant, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Melanie Föll, Matthias Fahrner
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Protein_database | #main/Protein_database | n/a |
|
| Sample1 | #main/Sample1 | n/a |
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| Sample2 | #main/Sample2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | MaxQuant | toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3 |
| 4 | Filter | Filter1 |
| 5 | Select | Grep1 |
| 6 | Cut | Cut1 |
| 7 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 8 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0 |
| 9 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1 |
| 10 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0 |
| 11 | Cut | Cut1 |
| 12 | Compute | toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0 |
| 13 | Histogram | toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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| _anonymous_output_17 | #main/_anonymous_output_17 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 40 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:53
Tags AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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