Proteomics: MaxQuant workflow
6.0

Workflow Type: Galaxy

Label-free data analysis using MaxQuant

Associated Tutorial

This workflows is part of the tutorial Label-free data analysis using MaxQuant, available in the GTN

Features

Thanks to...

Tutorial Author(s): Melanie Föll, Matthias Fahrner

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Protein_database #main/Protein_database n/a
  • File
Sample1 #main/Sample1 n/a
  • File
Sample2 #main/Sample2 n/a
  • File

Steps

ID Name Description
3 MaxQuant toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.10.43+galaxy3
4 Filter Filter1
5 Select Grep1
6 Cut Cut1
7 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
8 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
9 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
10 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
11 Cut Cut1
12 Compute toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/1.3.0
13 Histogram toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

6.0 (earliest) Created 2nd Jun 2025 at 10:53 by GTN Bot

Added/updated 4 files


Open master d09622d
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Views: 40   Downloads: 4   Runs: 0

Created: 2nd Jun 2025 at 10:53

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