Proteomics: Peptide and Protein ID using OpenMS 6.0
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Associated Tutorial
This workflows is part of the tutorial Peptide and Protein ID using OpenMS tools, available in the GTN
Thanks to...
Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning
Tutorial Contributor(s): Saskia Hiltemann, Nicola Soranzo, Björn Grüning, Bérénice Batut, Helena Rasche, Melanie Föll, Clemens Blank, Florian Christoph Sigloch, Niall Beard, Martin Čech, Armin Dadras
Funder(s): ELIXIR Europe, de.NBI, University of Freiburg
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| fasta input | #main/fasta input | n/a |
|
| mzml input | #main/mzml input | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | PeakPickerHiRes | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peakpickerhires/PeakPickerHiRes/2.3.0 |
| 3 | XTandemAdapter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.6+galaxy0 |
| 4 | FileInfo | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0 |
| 5 | PeptideIndexer | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.6+galaxy0 |
| 6 | IDPosteriorErrorProbability | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.6+galaxy0 |
| 7 | FalseDiscoveryRate | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0 |
| 8 | IDScoreSwitcher | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.6+galaxy0 |
| 9 | FileInfo | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0 |
| 10 | FidoAdapter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.6+galaxy0 |
| 11 | FalseDiscoveryRate | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0 |
| 12 | FileInfo | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0 |
| 13 | TextExporter | toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.6+galaxy0 |
| 14 | Select | Grep1 |
| 15 | Select | Grep1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_16 | #main/_anonymous_output_16 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 41 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:53
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