MS Imaging Loading Exploring Data
4.0

Workflow Type: Galaxy

Mass spectrometry imaging: Loading and exploring MSI data

Associated Tutorial

This workflows is part of the tutorial Mass spectrometry imaging: Loading and exploring MSI data, available in the GTN

Thanks to...

Tutorial Author(s): Melanie Föll, Björn Grüning

Tutorial Contributor(s): Saskia Hiltemann, Bérénice Batut, Björn Grüning, Nicola Soranzo, Helena Rasche, Melanie Föll, Martin Čech, Armin Dadras

Funder(s): ELIXIR Europe, de.NBI, University of Freiburg

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
internal calibrants.tab internal calibrants.tab n/a
  • File
mouse_kidney_cut.i mouse_kidney_cut.i n/a
  • File

Steps

ID Name Description
2 MSI data exporter toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/1.12.1.1
3 MSI Qualitycontrol toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/1.12.1.2
4 Sort toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
5 Select Grep1

Version History

4.0 (earliest) Created 2nd Jun 2025 at 10:54 by GTN Bot

Added/updated 4 files


Open master 998e663
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Views: 37   Downloads: 3   Runs: 0

Created: 2nd Jun 2025 at 10:54

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Total size: 46.9 KB
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