Object tracking using CellProfiler
Version 1

Inputs

ID Name Description Type
input_pipeline input_pipeline runtime parameter for tool SaveImages n/a

Steps

ID Name Description
0 Starting Modules toolshed.g2.bx.psu.edu/repos/bgruening/cp_common/cp_common/3.1.9+galaxy1
1 Input dataset
2 ColorToGray toolshed.g2.bx.psu.edu/repos/bgruening/cp_color_to_gray/cp_color_to_gray/3.1.9+galaxy0
3 Unzip toolshed.g2.bx.psu.edu/repos/imgteam/unzip/unzip/0.2
4 IdentifyPrimaryObjects toolshed.g2.bx.psu.edu/repos/bgruening/cp_identify_primary_objects/cp_identify_primary_objects/3.1.9+galaxy1
5 MeasureObjectSizeShape toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_size_shape/cp_measure_object_size_shape/3.1.9+galaxy0
6 MeasureObjectIntensity toolshed.g2.bx.psu.edu/repos/bgruening/cp_measure_object_intensity/cp_measure_object_intensity/3.1.9+galaxy0
7 TrackObjects toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9+galaxy0
8 OverlayOutlines toolshed.g2.bx.psu.edu/repos/bgruening/cp_overlay_outlines/cp_overlay_outlines/3.1.9+galaxy0
9 Tile toolshed.g2.bx.psu.edu/repos/bgruening/cp_tile/cp_tile/3.1.9+galaxy0
10 SaveImages toolshed.g2.bx.psu.edu/repos/bgruening/cp_save_images/cp_save_images/3.1.9+galaxy1
11 ExportToSpreadsheet toolshed.g2.bx.psu.edu/repos/bgruening/cp_export_to_spreadsheet/cp_export_to_spreadsheet/3.1.9+galaxy1
12 CellProfiler toolshed.g2.bx.psu.edu/repos/bgruening/cp_cellprofiler/cp_cellprofiler/3.1.9+galaxy0

Outputs

ID Name Description Type
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
unzipped unzipped n/a input
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
output_pipeline output_pipeline n/a txt
pipeline_output pipeline_output n/a input
logs logs n/a txt
help Creators and Submitter
Creators
Not specified
Submitter
Activity

Views: 124   Downloads: 3

Created: 21st Mar 2021 at 18:12

Last updated: 21st Mar 2021 at 18:12

Last used: 16th Apr 2021 at 20:50

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Version History

Version 1 Created 21st Mar 2021 at 18:12 by Beatriz Serrano-Solano

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