GTN - Sequence Analyses - Mapping
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Associated Tutorial
This workflows is part of the tutorial Mapping, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Tristan Reynolds
Tutorial Author(s): Joachim Wolff, Bérénice Batut, Helena Rasche
Tutorial Contributor(s): Tristan Reynolds, Teresa Müller, Björn Grüning, Saskia Hiltemann, Nicola Soranzo, Helena Rasche, Anthony Bretaudeau, Bérénice Batut, Mehmet Tekman, Ekaterina Polkh, William Durand, Niall Beard, Maria Doyle
Funder(s): The University of Melbourne, Melbourne Bioinformatics, Australian BioCommons
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Flatten collection | __FLATTEN__ |
| 2 | Trim Galore! | toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1 |
| 3 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
| 4 | Bowtie2 | toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.4+galaxy0 |
| 5 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9 |
| 6 | JBrowse | toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1 |
| 7 | Stats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 |
| 8 | Filter | toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1 |
| 9 | Stats | toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1 |
Version History
master
4.0
Creators and Submitter
Views: 2315 Downloads: 358 Runs: 1
Created: 2nd Jun 2025 at 11:03
Last updated: 22nd Dec 2025 at 13:14
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Teams: Galaxy Training Network
Organizations: Galaxy
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The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
