I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
SEEK ID: https://workflowhub.eu/people/731
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Joined: 23rd Apr 2024
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Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
Organisms: Homo sapiens, SARS-CoV-2
This Workflow transcribes a video or audio with multiple speakers. After transcription, it allocates the names of the speakers and groups and cleans passages from the two main speakers for further analysis.
Associated Tutorial
This workflows is part of the tutorial Transcribing Audio and Video files with Automated Speech Recognition, available in the ...
Train and evaluate a HANCOCK recurrence model with Multimodal Learner
Associated Tutorial
This workflows is part of the tutorial Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Associated Tutorial
This workflows is part of the tutorial Introduction to Galaxy as an RDM platform, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Basic workflow to upload images into OMERO together with ROIs
Associated Tutorial
This workflows is part of the tutorial Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Segmentation of Anatomical Structures in Medical 3-D Images, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
An example how ISCC codes can be used to verify image analysis steps
Associated Tutorial
This workflows is part of the tutorial Content Tracking and Verification in Galaxy Workflows with ISCC-SUM, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
This workflow is executing a BiaPy workflow using a YAML file where the model selection is predefined.
Associated Tutorial
This workflows is part of the tutorial Execute a BiaPy workflow in Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Associated Tutorial
This workflows is part of the tutorial GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial M. tuberculosis Variant Analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Predict variants and drug resistance from M. tuberculosis sequence samples (Illumina)
Associated Tutorial
This workflows is part of the tutorial M. tuberculosis Variant Analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Genome Assembly of MRSA using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Quality and contamination control in bacterial isolate using Illumina MiSeq Data, available in the GTN
Features
- Includes [Galaxy Workflow ...
Mapping
Associated Tutorial
This workflows is part of the tutorial Mapping, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Formation of the Super-Structures on the Inactive X, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
atac-seq
Associated Tutorial
This workflows is part of the tutorial ATAC-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Remove contamination and host reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...