Workflows

What is a Workflow?
765 Workflows visible to you, out of a total of 827
Work-in-progress

plant2human workflow

GitHub last commit (branch) Status cwltool License Version ...

Type: Common Workflow Language

Creator: Sora Yonezawa

Submitter: Sora Yonezawa

DOI: 10.48546/workflowhub.workflow.1206.4

Single-cell RNA-seq workflow with Scanpy and Anndata. Based on the 3k PBMC clustering tutorial from Scanpy. It takes count matrix, barcodes and feature files as input and creates an Anndata object out of them. It then performs QC and filters for lowly expressed genes and cells. Then the data is normalized and scaled. Then PCs are computed to further cluster using louvain algorithm. It also generated various plots of clustering colored with highly ranked genes.

Type: Galaxy

Creators: Pavankumar Videm, Hans-Rudolf Hotz, Mehmet Tekman, Bérénice Batut

Submitter: WorkflowHub Bot

This workflow allows you to annotate a genome with Helixer and evaluate the quality of the annotation using BUSCO and Genome Annotation statistics. GFFRead is also used to predict protein sequences derived from this annotation, and BUSCO and OMArk are used to assess proteome quality.

Type: Galaxy

Creator: Romane Libouban

Submitter: WorkflowHub Bot

No description specified

Type: Common Workflow Language

Creators: None

Submitter: Aishwarya Iyer

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creator: Pixelgen Technologies AB

Submitter: WorkflowHub Bot

Point-based Individual Tree Delineation from 3D LiDAR Point Cloud Data.

This module implements a lightweight and easy-to-use Point-based method for individual tree delineation from 3D point cloud data using pure C/C++.

The source code files are included in folder [TreeSeparation], which consists of a project generated from Visual Studio 2015. The CLASS for tree separation is named "FoxTree" and can be found in the respect FoxTree.h and FoxTree.cpp files.

Inupt

The ...

Type: Unrecognized workflow type

Creators: None

Submitter: Jinhu Wang

GitHub Actions CI Status GitHub Actions Linting StatusAWS CI[![Cite ...

Type: Nextflow

Creators: None

Submitter: WorkflowHub Bot

The workflow starts with selecting EH38E2924876 as the search term. Genomic position of provided unique regulatory element identifier was retrieved from CFDE Linked Data Hub[1]. A list of variants in the region of the regulatory element was retrieved from CFDE Linked Data Hub[1]. Variant/variant set associated allele specific epigenomic signatures were retrieved from CFDE LDH[5] based on Roadmap and ENTEx data[6], [4]. GTEx eQTL and sQTL evidence for the given variant(s) were retrieved from CFDE ...

Type: Playbook Workflow Builder Workflow

Creator: Playbook Partnership NIH CFDE

Submitter: Daniel Clarke

DOI: 10.48546/workflowhub.workflow.1249.2

A file containing GEO Aging Signatures was first uploaded. The file containing GEO Aging Signatures was loaded as a gene signature. A file containing GTEx Aging Signatures was first uploaded. The file containing GTEx Aging Signatures was loaded as a gene signature. Significant genes were extracted from the GEO Aging Signatures. Significant genes were extracted from the GTEx Aging Signatures. Reversers and mimickers from over 1 million signatures were identified using SigCom LINCS[1]. Resolved ...

Type: Playbook Workflow Builder Workflow

Creator: Playbook Partnership NIH CFDE

Submitter: Daniel Clarke

DOI: 10.48546/workflowhub.workflow.1248.1

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