Workflows

What is a Workflow?
1189 Workflows visible to you, out of a total of 1270
Stable

SynProtX

DOI

An official implementation of our research paper "SynProtX: A Large-Scale Proteomics-Based Deep Learning Model for Predicting Synergistic Anticancer Drug Combinations".

SynProtX is a deep learning model that integrates large-scale proteomics data, molecular graphs, and chemical fingerprints to predict synergistic effects of anticancer drug combinations. It provides robust ...

Stable

SAMBA is a FAIR scalable workflow integrating, into a unique tool, state-of-the-art bioinformatics and statistical methods to conduct reproducible eDNA analyses using Nextflow. SAMBA starts processing by verifying integrity of raw reads and metadata. Then all bioinformatics processing is done using commonly used procedure (QIIME 2 and DADA2) but adds new steps relying on dbOTU3 and microDecon to build high quality ASV count tables. Extended statistical analyses are also performed. Finally, SAMBA ...

Type: Nextflow

Creators: Cyril Noel, Alexandre Cormier, Laura Leroi, Patrick Durand, Laure Quintric

Submitter: Cyril Noel

DOI: 10.48546/workflowhub.workflow.156.1

Stable

Introduction

wombat-p pipelines is a bioinformatics analysis pipeline that bundles different workflow for the analysis of label-free proteomics data with the purpose of comparison and benchmarking. It allows using files from the proteomics metadata standard SDRF.

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses ...

Type: Nextflow

Creators: Veit Schwämmle, Magnus Palmblad

Submitters: Laura Rodriguez-Navas, José Mª Fernández

DOI: 10.48546/workflowhub.workflow.444.2

Click-qPCR

Ultra-simple tool for interactive qPCR data analysis developed by R and Shiny.

Read this document in Japanese (日本語版のユーザーガイドはこちら)

Overview

Click-qPCR is a user-friendly Shiny web application designed for the straightforward analysis of real-time quantitative PCR (qPCR) data.

This tool is readily accessible via a web browser at https://kubo-azu.shinyapps.io/Click-qPCR/, requiring no local installation for end-users. ...

Type: Unrecognized workflow type

Creator: Azusa Kubota

Submitter: Azusa Kubota

Associated Tutorial

This workflows is part of the tutorial Deep Learning (Part 2) - Recurrent neural networks (RNN), available in the GTN

Features

Thanks to...

Workflow Author(s): Kaivan Kamali

Tutorial Author(s): [Kaivan ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Final output is a table of Taxa and how many sequences aligned with them. This table can be used to then visualize via a pie chart.

Associated Tutorial

This workflows is part of the tutorial Taxonomic Analysis of eDNA, available in the GTN

Features

Type: Galaxy

Creators: None

Submitter: GTN Bot

Age prediction using machine learning

Associated Tutorial

This workflows is part of the tutorial Age prediction using machine learning, available in the GTN

Thanks to...

Tutorial Author(s): Ekaterina Polkh, [Anup ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Age prediction using machine learning

Associated Tutorial

This workflows is part of the tutorial Age prediction using machine learning, available in the GTN

Thanks to...

Tutorial Author(s): Ekaterina Polkh, [Anup ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Basics of machine learning

Associated Tutorial

This workflows is part of the tutorial Basics of machine learning, available in the GTN

Features

Thanks to...

Tutorial Author(s): [Anup ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

Interval-Wise Testing for omics data

Associated Tutorial

This workflows is part of the tutorial Interval-Wise Testing for omics data, available in the GTN

Thanks to...

Tutorial Author(s): Marzia A Cremona, Fabio Cumbo ...

Type: Galaxy

Creators: None

Submitter: GTN Bot

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