Workflows

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260 Workflows visible to you, out of a total of 276

CroMaSt: A workflow for domain family curation through cross-mapping of structural instances between protein domain databases

CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases. CroMaSt (for Cross-Mapper of domain Structural instances) will classify all structural instances of a given domain type into 3 different categories (core, true and ...

Type: Common Workflow Language

Creators: Hrishikesh Dhondge, Isaure Chauvot de Beauchêne, Marie-Dominique Devignes

Submitter: Hrishikesh Dhondge

Stable

This workflow can be used to fit dose-response curves from normalised cell-based assay data (%confluence) using the KNIME HCS extension. The workflow expects triplicates for each of eight test concentrations. This workflow needs R-Server to run in the back-end. Start R and run the following command: library(Rserve); Rserve(args = "--vanilla"). Three types of outliers can be removed: 1 - Outliers from triplicate measurement (standard deviation cut-off can be selected), 2 - inactive and weekly ...

Type: KNIME

Creator: Jeanette Reinshagen

Submitter: Jeanette Reinshagen

Stable

This workflow can be used to fit dose-response curves from normalised biochemical assay data (%Inhibition) using the HCS extension. This workflow needs R-Server to run in the back-end. Start R and run the following command: library(Rserve); Rserve(args = "--vanilla") IC50 values will not be extrapolated outside the tested concentration range For activity classification the following criteria are applied:

  • maximum (average % inhibion) >25 % and slope is >0 and IC50 > 5 µM or
  • minimum ...

Type: KNIME

Creator: Jeanette Reinshagen

Submitter: Jeanette Reinshagen

Stable

Generates Dose-response curve fits on cell-based toxicity data. Outliers of replicate data-sets can be removed by setting a threshold for standard deviation (here set to 25). Curve fits for compounds showing low response can be removed by setting a threshold for minimum activity (here set to 75% confluence). This workflow needs R-Server to run in the back-end. Start R and run the following command: library(Rserve); Rserve(args = "--vanilla")

Type: KNIME

Creator: Jeanette Reinshagen

Submitter: Jeanette Reinshagen

Stable

BackTrackBB is a program for detection and space-time location of seismic sources based on multi-scale, frequency-selective statistical coherence of the wave field recorded by dense large-scale seismic networks and local antennas. The method is designed to enhance coherence of the signal statistical features across the array of sensors and consists of three steps. They are signal processing, space-time imaging and detection and location.

More information: https://backtrackbb.github.io/

Type: PyCOMPSs

Creators: Natalia Poiata, Claudio Satriano, Javier Conejero

Submitter: Raül Sirvent

Work-in-progress
No description specified

A workflow for marine Genomic Observatories data analysis

An EOSC-Life project

Build Status

The workflows developed in the framework of this project are based on pipeline-v5 of the MGnify resource.

This branch is a child of the pipeline_5.1 branch that contains all CWL descriptions of the MGnify ...

Type: Common Workflow Language

Creators: Haris Zafeiropoulos, Martin Beracochea

Submitter: Haris Zafeiropoulos

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