Workflows

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39 Workflows visible to you, out of a total of 39

Stable

Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly RNASEQ reads and annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Alignment, assembly and annotation of generated transcripts from RNASEQ reads.

Type: Galaxy

Creators: None

Submitter: Ambarish Kumar

Stable

Virus genome assembly with Unicycler and Spades,
The 2 assemblers works in parallel. The graph visualization is made with Bandage.
workflow git repository : https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2/blob/master/Assembly/workflow/assembly-wf-virus.cwl
Based on https://github.com/galaxyproject/SARS-CoV-2/blob/master/genomics/2-Assembly/as_wf.png

Type: Common Workflow Language

Creators: None

Submitter: francois moreews

Stable

Analysis of variation within individual COVID-19 samples
using bowtie2, bwa, fastp, multiqc , picard ,samtools, snpEff
Workflow, tools and data are available on https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2/tree/master/Variation
This worklow was ported into CWL from a Galaxy Workflow
( https://github.com/galaxyproject/SARS-CoV-2/tree/master/genomics/4-Variation migrated to CWL).

Type: Common Workflow Language

Creator: Camille Juigné

Submitter: Camille Juigné

Stable

The tutorial for this workflow can be found on [Galaxy Training Network](https://training.galaxyproject.org/training-material/topics/climate/tutorials/climate-101/tutorial.html)

Type: Galaxy

Creator: Anne Claire Fouilloux

Submitter: Bert Droesbeke

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