GalaxyProject SARS-CoV-2
OverviewOngoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures https://covid19.galaxyproject.org
Space: COVID-19 Biohackathon
SEEK ID: https://workflowhub.eu/projects/3
Public web page: https://github.com/galaxyproject/SARS-CoV-2
Organisms: Homo sapiens, Sars-cov-2
WorkflowHub PALs: No PALs for this Team
Team created: 8th Apr 2020
Related items
Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network
Organizations: ELIXIR Belgium
https://orcid.org/0000-0003-0522-5674
Teams: GalaxyProject SARS-CoV-2
Organizations: BC Centre for Disease Control
https://orcid.org/0000-0002-6178-3585
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Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
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Alignment, assembly RNASEQ reads and annotation of generated transcripts.
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Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.
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Alignment, assembly and annotation of generated transcripts from RNASEQ reads.
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Detects SNPs and INDELs using VARSCAN2.
