Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures https://covid19.galaxyproject.org
Space: COVID-19 Biohackathon
SEEK ID: https://workflowhub.eu/projects/3
Public web page: https://github.com/galaxyproject/SARS-CoV-2
Organisms: Homo sapiens, Sars-cov-2
WorkflowHub PALs: No PALs for this Team
Team created: 8th Apr 2020
Related items
Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network
Organizations: ELIXIR Belgium

Teams: GalaxyProject SARS-CoV-2
Organizations: BC Centre for Disease Control

Expertise: Bioinformatics, Data Management, Molecular Biology
Tools: Databases, PCR, Workflows, Web services
Stable
Alignment, assembly and annotation of RNQSEQ reads using TOPHAT (without filtering out host reads).
Stable
Alignment, assembly RNASEQ reads and annotation of generated transcripts.
Stable
Alignment, assembly and annotation of RNASEQ reads as well as annotation of generated transcripts.
Stable
Alignment, assembly and annotation of generated transcripts from RNASEQ reads.
Stable
Detects SNPs and INDELs using VARSCAN2.