canonical record: https://zenodo.org/records/10405036
Source data (GSE182152) was analysed with WFHub:688 to generate these datasets
Creators: Helena Rasche, Iacopo Cristoferi, Marek Ostaszewski, Andrew Stubbs
Submitter: Helena Rasche
COVID-19: variation analysis on ARTIC PE data
The workflow for Illumina-sequenced ampliconic data builds on the RNASeq workflow for paired-end data using the same steps for mapping and variant calling, but adds extra logic for trimming amplicon primer sequences off reads with the ivar package. In addition, this workflow uses ivar also to identify amplicons affected by primer-binding site mutations and, if possible, excludes reads derived from such ...
Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA
Type: Galaxy
Creators: Iacopo Cristoferi, Helena Rasche, Clinical Bioinformatics Unit, Pathology Department, Eramus Medical Center
Submitter: Helena Rasche
This portion of the workflow produces sets of feature Counts ready for analysis by limma/etc.
Type: Galaxy
Creators: Iacopo Cristoferi, Helena Rasche, Clinical Bioinformatics Unit, Pathology Department, Eramus Medical Center
Submitter: Helena Rasche
Analyse Bulk RNA-Seq data in preparation for downstream Pathways analysis with MINERVA