SOPs
What is a SOP?Filters
If your research project is producing workflows, they should be registered in WorkflowHub:
- To give visibility to the workflows created by the project, and by the different networks and communities within the project
- To give visibility to the workflows used by project
- To share workflows across the project, within project networks and externally
- To credit and cite the people making the workflows, and the networks to which they belong
- To track the new versions of workflows as they are ...
Creators: Stian Soiland-Reyes, Carole Goble, Finn Bacall, Johan Gustafsson, Rafael Andrade Buono
Submitter: Stian Soiland-Reyes
The BioDT project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:
- To give visibility to the workflows created by the project and by the different networks and communities within the project
- To give visibility to the workflows used by project that were created
- To share workflows across the project, within project networks and externally
- To credit and cite the people making the workflows and the networks to which they ...
SOP for DNA extraction and Illumina amplicon library preparation of soil core samples collected for the Case Study "Characterization of Prokaryotic and Eukaryotic Biodiversity from Soil Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creator: Cátia Chaves
Submitter: Cátia Chaves
This BioExcel best practice guide outlines the development process for writing a workflow using the Common Workflow Language (CWL), from creating and selecting tools like BioBB, through early experimentation, reuse and testing, to optimization and ensuring reproducibility before publication in workflow repositories.
Creators: Stian Soiland-Reyes, Douglas Lowe, Robin Long
Submitter: Stian Soiland-Reyes
SOP for DNA extraction and Illumina amplicon library preparation of encapsulated water samples collected for the Case Study "Detection of Non-Indigenous Marine Species from Port Water Samples" withing the scope of BGE (Biodiversity Genomics Europe) project.
Creator: Cátia Chaves
Submitter: Cátia Chaves
The EuroScienceGateway project is producing and maintaining workflows. We need to register those workflows in WorkflowHub:
- To give visibility to the workflows created by the project and by the different networks and communities within the project
- To give visibility to the workflows used by project that were created
- To share workflows across the project, within project networks and externally
- To credit and cite the people making the workflows and the ...
Creators: Stian Soiland-Reyes, Carole Goble, Finn Bacall
Submitter: Stian Soiland-Reyes
Tutorial and specification for packaging IEEE 2791-2020 (BioCompute Objects/BCOs) as RO-Crate Research Objects.
BioCompute Object (BCO) is a standard (IEEE 2791-2020) for describing computational workflows for regularory submission, e.g. a genomics workflow as part of personalized medicine.
RO-Crate is a community-based specification for research data packaging of Research Objects with rich metadata, based on open standards and vocabularies like JSON-LD and schema.org.
BCO RO-Crate is the combination ...
Creators: Stian Soiland-Reyes, Jonathon Keeney, Hadley King, Janisha Patel, Alex Coleman
Submitter: Stian Soiland-Reyes
Creator: Ambarish Kumar
Submitter: Ambarish Kumar
Detects SNPs and short INDELs.
Creator: Ambarish Kumar
Submitter: Ambarish Kumar
Detects SNPs and short INDELs.
Creator: Ambarish Kumar
Submitter: Ambarish Kumar