Data files

canonical record: https://zenodo.org/records/10405036

Source data (GSE182152) was analysed with WFHub:688 to generate these datasets

Download all genome from https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?SeqType_s=Nucleotide with filter host:viridiplantae and Refseq on.

This public data repository (https://public.spider.surfsara.nl/project/lidarac/MAMBO/) provides the LiDAR point cloud datasets which were clipped using the boundary polygons (shapefiles) of the MAMBO demonstration sites. The raw LiDAR point cloud tiles were first downloaded from the national repository in the respective country based on the approximate location of each demonstration site. The data repository uses the storage services from the Dutch IT infrastructure SURF (https://www.surf.nl/en). ...

An example input file for the Specimen Data Refinery workflow

This text file (‘epsgs.txt’) provides the specifications of the coordinate reference system for the countries in which the MAMBO demonstration sites are located. It uses the standard machine-readable code from the European Petroleum Survey Group (EPSG) for coordinate systems worldwide (https://epsg.io/). The text file with the EPSG specifications is loaded in the Rasterization Jupyter Notebook of Laserfarm.

This text file (‘grids.txt’) provides the specifications of the re-tiling grid that is used in the Laserfarm Jupyter Notebooks for the MAMBO demonstration sites. It includes information on (1) the minimum and maximum of the X and Y coordinates (min_x, max_x, min_y, max_y) of the bounding box around the region of interest, and (2) the number of tiles (n_tiles_side) for re-tiling. It is an input file in the Re-tiling Jupyter Notebook.