WorkflowHub

21 items tagged with 'Bioinformatics'.

People (21)

Teams: de.NBI Cloud

Organizations: de.NBI Cloud

https://orcid.org/0000-0002-6540-6875

Expertise: Bioinformatics, Cheminformatics, Software Engineering, Metabolomics, Lipidomics

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Jeanette Reinshagen

Teams: EU-Openscreen

Organizations: Fraunhofer Institute for Translational Medicine and Pharmacology ITMP

https://orcid.org/0000-0002-8080-9170

Expertise: Bioinformatics, Cheminformatics, Machine Learning

Tools: Workflows

Teams: ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression

Organizations: National Laboratory of Scientific Computing

https://orcid.org/0000-0002-2151-7418

Expertise: Bioinformatics, Scientific workflow developement, high-performance computing, phylogenomics

I am a bioinformatician and phylogenetics. I really love working on problems at the intersection of high-performance computing and scientific workflows applied to omics

Hrishikesh Dhondge

Teams: CAPSID

Organizations: CNRS - Centre Est

https://orcid.org/0000-0002-7025-2241

Expertise: Bioinformatics, Molecular Modelling, Biomolecular Dynamics Simulations, Database Development, Protein Structural Alignment

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-1299-9600

Expertise: Bioinformatics, Molecular Biology, Computer Science, NGS, Software Engineering

Tools: Nextflow, Roddy

Teams: EU-Openscreen, OME

Organizations: Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, /

https://orcid.org/0000-0002-1740-8390

Expertise: Cheminformatics, Bioinformatics

Tools: R, Python, Workflows

Pranavathiyani G

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-4854-8238

Expertise: Bioinformatics, Systems Biology, Machine Learning

Tools: Galaxy, Cytoscape, Databases, Jupyter notebook, R, Python

Ph.D. Student at Department of Bioinformatics, Pondicherry University

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-1590-8313

Expertise: Bioinformatics, Biostatistics, Bioengineering, Metagenomics, Scientific workflow developement, Data Management, Systems Biology, Ecophysiology

Tools: Transcriptomics, Python, Workflows, Snakemake, R, Conda, Jupyter notebook, Java, Web, Machine Learning, Databases

eric.rivals@lirmm.fr Rivals

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-3791-3973

Expertise: Bioinformatics, Genomics, algorithm, Machine Learning, Metagenomics, NGS, Computer Science

Tools: Transcriptomics, Genomics, Python, C/C++, Web services, Workflows

Teams: SeBiMER

Organizations: IFREMER

https://orcid.org/0000-0002-7139-4073

Expertise: Bioinformatics, Biostatistics, Metabarcoding, Metagenomics

Tools: Workflows, Nextflow, R

Evgenii Tretiakov

Teams: Harkany Lab

Organizations: Medical University of Vienna

https://orcid.org/0000-0001-5920-2190

Expertise: Systems Biology, Bioengineering, Bioinformatics, Neuroscience

Tools: Workflows, Machine Learning, Transcriptomics

Laura Rodriguez-Navas

Teams: GalaxyProject SARS-CoV-2, nf-core viralrecon, EOSC-Life - Demonstrator 7: Rare Diseases, iPC: individualizedPaediatricCure, EJPRD WP13 case-studies workflows, TransBioNet, OpenEBench

Organizations: Barcelona Supercomputing Center (BSC-CNS)

https://orcid.org/0000-0003-4929-1219

Expertise: Bioinformatics, Computer Science, AI, Machine Learning

Computer Engineer in Barcelona Supercomputing Center (BSC)

Sangram Keshari Sahu

Teams: nf-core

Organizations: IISER, Mohali

https://orcid.org/0000-0001-5010-9539

Expertise: Bioinformatics, Scientific workflow developement, Software Engineering

Tools: Workflows, Nextflow, nf-core, R, Python

Teams: nf-core

Organizations: SciLifeLab

https://orcid.org/0000-0003-4101-2502

Expertise: Bioinformatics

Tools: Nextflow, nf-core, Workflows, Python

Bioinformatician in Stockholm, Sweden. Lead for nf-core and MultiQC projects.

Teams: GalaxyProject SARS-CoV-2

Organizations: Earlham Institute

https://orcid.org/0000-0003-3627-5340

Expertise: Bioinformatics

Tools: Galaxy

Teams: V-Pipe

Organizations: SIB - Swiss Institute of Bioinformatics

https://orcid.org/0000-0002-7561-0810

Expertise: Bioinformatics, Software Engineering

Tools: Workflows, C/C++, Perl

Medical doctor and bioinformatician

Developer from the Swiss Institute of Bioinformatics (SIB) Working at the Computational Biology Group (CBG) of ETH Zurich.

Diplom in Medicine. MSc in Bioinformatics and Proteomics.

I am also a ski teacher as a hobby.

Jean-Loup Faulon

Teams: IBISBA Workflows

Organizations: INRAe

https://orcid.org/0000-0003-4274-2953

Expertise: Synthetic Biology, Computer Aided Design, Scientific workflow developement, Retrosynthesis, Systems Biology, Bioinformatics, Cheminformatics

Tools: Machine Learning, Galaxy

Research Director @ INRAe

Teams: IBISBA Workflows

Organizations: Unspecified

Expertise: Bioinformatics

Tools: Workflows, Web services, Python

Teams: GalaxyProject SARS-CoV-2

Organizations: BC Centre for Disease Control

https://orcid.org/0000-0002-6178-3585

Expertise: Bioinformatics, Data Management, Molecular Biology

Tools: Databases, PCR, Workflows, Web services

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