31 items tagged with 'Bioinformatics'.

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-7167-0875

Expertise: Bioinformatics, Genomics, Scientific workflow developement

Tools: Nextflow, nf-core, Python, R

Dongyang Wang

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-6440-6980

Expertise: Bioinformatics, Genomics, Machine Learning

Tools: Python, R, Machine Learning

I am a Ph.D. student in Gong lab. I am interested in cancer genomics, including the mining of genetic risk determinants in cancer, functional prediction of genetic variants, tumor-associated molecular epidemiology, large-scale data integration, analysis, and mining, as well as the construction of bioinformatical data platforms.

Jasper Ouwerkerk

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-2556-2125

Expertise: Bioinformatics

Nils Hoffmann

Teams: de.NBI Cloud

Organizations: de.NBI Cloud

https://orcid.org/0000-0002-6540-6875

Expertise: Bioinformatics, Cheminformatics, Software Engineering, Metabolomics, Lipidomics

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Jeanette Reinshagen

Teams: EU-Openscreen

Organizations: Fraunhofer Institute for Translational Medicine and Pharmacology ITMP

https://orcid.org/0000-0002-8080-9170

Expertise: Bioinformatics, Cheminformatics, Machine Learning

Tools: Workflows

Kary Ocaña

Teams: ParslRNA-Seq: an efficient and scalable RNAseq analysis workflow for studies of differentiated gene expression

Organizations: National Laboratory of Scientific Computing

https://orcid.org/0000-0002-2151-7418

Expertise: Bioinformatics, Scientific workflow developement, high-performance computing, phylogenomics

I am a bioinformatician and phylogenetics. I really love working on problems at the intersection of high-performance computing and scientific workflows applied to omics

Hrishikesh Dhondge

Teams: CAPSID

Organizations: CNRS - Centre Est

https://orcid.org/0000-0002-7025-2241

Expertise: Bioinformatics, Molecular Modelling, Biomolecular Dynamics Simulations, Database Development, Protein Structural Alignment

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Philip Kensche

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-1299-9600

Expertise: Bioinformatics, Molecular Biology, Computer Science, NGS, Software Engineering

Tools: Nextflow, Roddy

Andrea Zaliani

Teams: EU-Openscreen, OME

Organizations: Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, /

https://orcid.org/0000-0002-1740-8390

Expertise: Cheminformatics, Bioinformatics

Tools: R, Python, Workflows

Pranavathiyani G

Teams: Bioinformatics Innovation Lab

Organizations: Pondicherry University

https://orcid.org/0000-0003-4854-8238

Expertise: Bioinformatics, Systems Biology, Machine Learning

Tools: Galaxy, Cytoscape, Databases, Jupyter notebook, R, Python

Ph.D. Student at Department of Bioinformatics, Pondicherry University

Julie Ripoll

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-1590-8313

Expertise: Bioinformatics, Biostatistics, Bioengineering, Metagenomics, Scientific workflow developement, Data Management, Systems Biology, Ecophysiology

Tools: Transcriptomics, Python, Workflows, Snakemake, R, Conda, Jupyter notebook, Java, Web, Machine Learning, Databases

eric.rivals@lirmm.fr Rivals

Teams: MAB - ATGC

Organizations: Centre National de la Recherche Scientifique (CNRS)

https://orcid.org/0000-0003-3791-3973

Expertise: Bioinformatics, Genomics, algorithm, Machine Learning, Metagenomics, NGS, Computer Science

Tools: Transcriptomics, Genomics, Python, C/C++, Web services, Workflows

Cyril Noel

Teams: SeBiMER

Organizations: IFREMER

https://orcid.org/0000-0002-7139-4073

Expertise: Bioinformatics, Biostatistics, Metabarcoding, Metagenomics

Tools: Workflows, Nextflow, R

Evgenii Tretiakov

Teams: Harkany Lab

Organizations: Medical University of Vienna

https://orcid.org/0000-0001-5920-2190

Expertise: Systems Biology, Bioengineering, Bioinformatics, Neuroscience

Tools: Workflows, Machine Learning, Transcriptomics

Laura Rodriguez-Navas

Teams: GalaxyProject SARS-CoV-2, nf-core viralrecon, EOSC-Life - Demonstrator 7: Rare Diseases, iPC: individualizedPaediatricCure, EJPRD WP13 case-studies workflows, TransBioNet, OpenEBench, ELIXIR Proteomics

Organizations: Barcelona Supercomputing Center (BSC-CNS), ELIXIR

https://orcid.org/0000-0003-4929-1219

Expertise: Bioinformatics, Computer Science, AI, Machine Learning

Computer Engineer in Barcelona Supercomputing Center (BSC)

Sangram Keshari Sahu

Teams: nf-core

Organizations: IISER, Mohali

https://orcid.org/0000-0001-5010-9539

Expertise: Bioinformatics, Scientific workflow developement, Software Engineering

Tools: Workflows, Nextflow, nf-core, R, Python

Phil Ewels

Teams: nf-core

Organizations: SciLifeLab

https://orcid.org/0000-0003-4101-2502

Expertise: Bioinformatics

Tools: Nextflow, nf-core, Workflows, Python

Bioinformatician in Stockholm, Sweden. Lead for nf-core and MultiQC projects.

Nicola Soranzo

Teams: GalaxyProject SARS-CoV-2

Organizations: Earlham Institute

https://orcid.org/0000-0003-3627-5340

Expertise: Bioinformatics

Tools: Galaxy

Ivan Topolsky

Teams: V-Pipe

Organizations: SIB - Swiss Institute of Bioinformatics

https://orcid.org/0000-0002-7561-0810

Expertise: Bioinformatics, Software Engineering

Tools: Workflows, C/C++, Perl

Medical doctor and bioinformatician

Developer from the Swiss Institute of Bioinformatics (SIB) Working at the Computational Biology Group (CBG) of ETH Zurich.

Diplom in Medicine. MSc in Bioinformatics and Proteomics.

I am also a ski teacher as a hobby.

Jean-Loup Faulon

Teams: IBISBA Workflows

Organizations: INRAe

https://orcid.org/0000-0003-4274-2953

Expertise: Synthetic Biology, Computer Aided Design, Scientific workflow developement, Retrosynthesis, Systems Biology, Bioinformatics, Cheminformatics

Tools: Machine Learning, Galaxy

Research Director @ INRAe

Foivos Gypas

Teams: IBISBA Workflows

Organizations: Unspecified

Expertise: Bioinformatics

Tools: Workflows, Web services, Python

Dan Fornika

Teams: GalaxyProject SARS-CoV-2

Organizations: BC Centre for Disease Control

https://orcid.org/0000-0002-6178-3585

Expertise: Bioinformatics, Data Management, Molecular Biology

Tools: Databases, PCR, Workflows, Web services

MGnify genomes analysis pipeline

MGnify, HoloFood at MGnify

Stable

MGnify genomes analysis pipeline

MGnify A pipeline to perform taxonomic and functional annotation and to generate a catalogue from a set of isolate and/or metagenome-assembled genomes (MAGs) using the workflow described in the following publication:

Gurbich TA, Almeida A, Beracochea M, Burdett T, Burgin J, Cochrane G, Raj S, Richardson L, Rogers AB, Sakharova E, Salazar GA and Finn RD. (2023) [MGnify Genomes: A Resource for Biome-specific Microbial Genome ...

Type: Nextflow

Creators: None

Submitter: Martin Beracochea

Created: 28th Apr 2023 at 10:36

Views: 81, Downloads: 0