Genome Assembly of MRSA using Illumina MiSeq Data 2.0
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Run on GalaxyGenome Assembly of MRSA using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Bazante Sanders, Bérénice Batut
Tutorial Author(s): Bazante Sanders, Bérénice Batut
Tutorial Contributor(s): Helena Rasche, Bazante Sanders, Saskia Hiltemann, Miaomiao Zhou, Verena Moosmann, Teresa Müller, Deepti Varshney, Anthony Bretaudeau, Cristóbal Gallardo, Björn Grüning, pimarin, Bérénice Batut, Nate Coraor, Wolfgang Maier
Funder(s): Avans Hogeschool, ABRomics
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| DRR187559_1 | DRR187559_1 | n/a |
|
| DRR187559_2 | DRR187559_2 | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
| 3 | fastp | toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.2+galaxy0 |
| 4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0 |
| 5 | Shovill | toolshed.g2.bx.psu.edu/repos/iuc/shovill/shovill/1.1.0+galaxy2 |
| 6 | Quast | toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.2.0+galaxy1 |
| 7 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/2022.09+galaxy4 |
| 8 | Bandage Info | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_info/2022.09+galaxy2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| fastp_json | fastp_json | n/a |
|
| shovill_log | shovill_log | n/a |
|
| quast_output | quast_output | n/a |
|
| bandage_info_output | bandage_info_output | n/a |
|
Version History
master
Creators and Submitter
Views: 38 Downloads: 3 Runs: 0
Created: 2nd Jun 2025 at 11:00
Tags AttributionsNone
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Teams: Galaxy Training Network
Organizations: Galaxy
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