Proteomics: Peptide and Protein Quantification via stable istobe labeling
7.0

Workflow Type: Galaxy

Peptide and Protein Quantification via Stable Isotope Labelling (SIL)

Associated Tutorial

This workflows is part of the tutorial Peptide and Protein Quantification via Stable Isotope Labelling (SIL), available in the GTN

Features

Thanks to...

Tutorial Author(s): Florian Christoph Sigloch, Björn Grüning, Matthias Fahrner

Tutorial Contributor(s): Saskia Hiltemann, Björn Grüning, Nicola Soranzo, Helena Rasche, Melanie Föll, Bérénice Batut, Florian Christoph Sigloch, William Durand, Niall Beard, Martin Čech, Armin Dadras

Funder(s): ELIXIR Europe, de.NBI, University of Freiburg

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
fasta file #main/fasta file n/a
  • File
mzml raw file #main/mzml raw file n/a
  • File

Steps

ID Name Description
2 FeatureFinderMultiplex toolshed.g2.bx.psu.edu/repos/galaxyp/openms_featurefindermultiplex/FeatureFinderMultiplex/2.6+galaxy0
3 XTandemAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_xtandemadapter/XTandemAdapter/2.6+galaxy0
4 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
5 PeptideIndexer toolshed.g2.bx.psu.edu/repos/galaxyp/openms_peptideindexer/PeptideIndexer/2.6+galaxy0
6 IDPosteriorErrorProbability toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idposteriorerrorprobability/IDPosteriorErrorProbability/2.6+galaxy0
7 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0
8 IDScoreSwitcher toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idscoreswitcher/IDScoreSwitcher/2.6+galaxy0
9 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
10 FidoAdapter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fidoadapter/FidoAdapter/2.6+galaxy0
11 FalseDiscoveryRate toolshed.g2.bx.psu.edu/repos/galaxyp/openms_falsediscoveryrate/FalseDiscoveryRate/2.6+galaxy0
12 FileInfo toolshed.g2.bx.psu.edu/repos/galaxyp/openms_fileinfo/FileInfo/2.6+galaxy0
13 TextExporter toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.6+galaxy0
14 IDMapper toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idmapper/IDMapper/2.6+galaxy0
15 Select Grep1
16 Select Grep1
17 IDConflictResolver toolshed.g2.bx.psu.edu/repos/galaxyp/openms_idconflictresolver/IDConflictResolver/2.6+galaxy0
18 MultiplexResolver toolshed.g2.bx.psu.edu/repos/galaxyp/openms_multiplexresolver/MultiplexResolver/2.5+galaxy0
19 ProteinQuantifier toolshed.g2.bx.psu.edu/repos/galaxyp/openms_proteinquantifier/ProteinQuantifier/2.6+galaxy0
20 Summary Statistics Summary_Statistics1
21 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
22 Histogram toolshed.g2.bx.psu.edu/repos/devteam/histogram/histogram_rpy/1.0.4

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_18 #main/_anonymous_output_18 n/a
  • File
_anonymous_output_19 #main/_anonymous_output_19 n/a
  • File
_anonymous_output_20 #main/_anonymous_output_20 n/a
  • File
_anonymous_output_21 #main/_anonymous_output_21 n/a
  • File
_anonymous_output_22 #main/_anonymous_output_22 n/a
  • File
_anonymous_output_23 #main/_anonymous_output_23 n/a
  • File
_anonymous_output_24 #main/_anonymous_output_24 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

7.0 (earliest) Created 2nd Jun 2025 at 10:53 by GTN Bot

Added/updated 4 files


Open master e20199b
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Views: 35   Downloads: 2   Runs: 0

Created: 2nd Jun 2025 at 10:53

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