Workflow Type: Galaxy
Associated Tutorial
This workflows is part of the tutorial Large genome assembly and polishing, available in the GTN
Features
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anna Syme
Tutorial Author(s): Anna Syme
Inputs
ID | Name | Description | Type |
---|---|---|---|
Assembly to be polished | Assembly to be polished | n/a |
|
long reads | long reads | n/a |
|
minimap setting (for long reads) | minimap setting (for long reads) | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | Minimap2: map long reads to assembly | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
4 | Racon: polish 1 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
5 | Minimap2: map long reads to polished assembly 1 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
6 | Racon: polish 2 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
7 | Minimap2: map long reads to polished assembly 2 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
8 | Racon: polish 3 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
9 | Minimap2: map long reads to polished assembly 3 | Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.26+galaxy0 |
10 | Racon: polish 4 | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.5.0+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
Assembly polished by long reads using Racon | Assembly polished by long reads using Racon | n/a |
|
Version History

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Views: 42 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 11:00

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