Bacterial Genome Annotation
2.0

Workflow Type: Galaxy

Bacterial Genome Annotation

Associated Tutorial

This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN

Features

Thanks to...

Workflow Author(s): Bérénice Batut, Pierre Marin

Tutorial Author(s): Bérénice Batut

Tutorial Contributor(s): Helena Rasche, Bérénice Batut, Teresa Müller, Paul Zierep, Anthony Bretaudeau, Björn Grüning

Funder(s): ABRomics, ELIXIR Europe, Institut Français de Bioinformatique

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
contigs contigs contigs
  • File

Steps

ID Name Description
1 ISEScan toolshed.g2.bx.psu.edu/repos/iuc/isescan/isescan/1.7.2.3+galaxy1
2 PlasmidFinder toolshed.g2.bx.psu.edu/repos/iuc/plasmidfinder/plasmidfinder/2.1.6+galaxy1
3 Integron Finder toolshed.g2.bx.psu.edu/repos/iuc/integron_finder/integron_finder/2.0.5+galaxy0
4 Bakta toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.3+galaxy0
5 Group Grouping1
6 Group Grouping1
7 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/9.3+galaxy1
8 Select last toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/9.3+galaxy1
9 Table to GFF3 toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.2
10 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1

Outputs

ID Name Description Type
isescan_results isescan_results n/a
  • File
plasmidfinder_results plasmidfinder_results n/a
  • File
integronfinder_summary integronfinder_summary n/a
  • File
bakta_summary bakta_summary n/a
  • File

Version History

2.0 (earliest) Created 2nd Jun 2025 at 10:56 by GTN Bot

Added/updated 4 files


Open master c23da31
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Views: 42   Downloads: 3   Runs: 0

Created: 2nd Jun 2025 at 10:56

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Total size: 126 KB
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