Mitogenome-Assembly-VGP0 1.0
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This workflows is part of the tutorial Assembly of the mitochondrial genome from PacBio HiFi reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): VGP, Galaxy
Tutorial Author(s): Delphine Lariviere
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Collection of Pacbio Data | Collection of Pacbio Data | n/a |
|
| Email adress | Email adress | Required for NCBI database query |
|
| Species name (latin name) | Species name (latin name) | Latin name of species |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 4 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 5 | Compress file(s) | toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| contigs_stats | contigs_stats | n/a |
|
| mitogenome_coverage | mitogenome_coverage | n/a |
|
| mitogenome_annotation | mitogenome_annotation | n/a |
|
| mitogenome_genbank | mitogenome_genbank | n/a |
|
| output_file | output_file | n/a |
|
Version History
master
Creators and Submitter
Views: 30 Downloads: 1 Runs: 0
Created: 2nd Jun 2025 at 11:02
AttributionsNone
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Organizations: Galaxy
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