WorkflowHub

37 items tagged with 'Python'.

People (37)

Mehmet Keçeci

Teams: WhiteSymmetry

Organizations: WhiteSymmetry

https://orcid.org/0000-0001-9937-9839

Expertise: Physics, Phython

Tools: Python

Physicist (Completed the dissertation phase of the Ph.D. in Physics), Reviewer, Author, Teacher & Lecturer, Occupational Safety Specialist

Keçeci, M. (2025). Keçeci Deterministic Zigzag Layout. WorkflowHub. https://doi.org/10.48546/workflowhub.document.31.1

Keçeci, M. (2025). Keçeci Zigzag Layout Algorithm. Authorea. June, 2025. https://doi.org/10.22541/au.175087581.16524538/v1

Keçeci, M. (2025). Keçeci's Arithmetical Square. Authorea. June, 2025. https://doi.org/10.22541/au.175070836.63624913/v1 ...

Sergio Mendoza

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-8878-4310

Expertise: High Performance Computing, Distributed Computing, Workflows

Tools: C/C++, Databases, Java, Python, Web services

Albert Puiggros

Teams: BSC-CES

Organizations: Barcelona Supercomputing Center (BSC-CNS)

https://orcid.org/0009-0006-0707-6448

Expertise: Provenance, workflow managers

Tools: Microbiology, Python

Research Engineer (Workflow Engineer) at the Barcelona Supercomputing Center (BSC) in Barcelona, Spain. Working on developing provenance features for BSC workflows.

Bachelor's degree in Physics Engineering from UPC; currently pursuing a Master's in Data Science at UPC.

Sora Yonezawa

Teams: bonohulab

Organizations: Hiroshima University

https://orcid.org/0009-0004-1874-3117

Expertise: Bioinformatics

Tools: CWL, Genomics, Python, R, Transcriptomics, Jupyter notebook

Hiroshima University, Graduate School of Integrated Sciences for life, Laboratory of Genome Informatics, Ph.D student GitHub: https://github.com/yonesora56

Aldar Cabrelles

Teams: EGA

Organizations: EGA

https://orcid.org/0000-0002-1131-3139

Expertise: Bioinformatics, Biochemistry

Tools: Python

Gonzalo Rizzo

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-5753-3869

Expertise: Machine Learning, R, Scientific workflow developement, Workflows, Agronomy, Biostatistics

Tools: Conda, Databases, Python, R, Snakemake

Saim Momin

Teams: Not specified

Organizations: Not specified

https://orcid.org/0009-0003-9935-828X

Expertise: Bioinformatics, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Conda, Jupyter notebook, Python, R, Single Cell analysis, Snakemake

Francis Charette-Migneault

Teams: CRIM - Computer Research Institute of Montréal

Organizations: CRIM

https://orcid.org/0000-0003-4862-3349

Expertise: AI, Machine Learning, Python, Scientific workflow developement, Software Engineering, Workflows, Geospatial, Computer Vision

Tools: CWL, Databases, Jupyter notebook, Python, Workflows, Conda, OGC

Clea Siguret

Teams: Not specified

Organizations: Not specified

https://orcid.org/0009-0005-6140-0379

Expertise: Bioinformatics, Computer Science, Data Management, Genomics, Python, R, Scientific workflow developement, Workflows, phylogenomics

Tools: Galaxy, Genomics, Git, Python, R, Workflows

Helge Hecht

Teams: RECETOX SpecDatRI, RECETOX, usegalaxy-eu, ELIXIR Metabolomics

Organizations: Masaryk University, RECETOX

https://orcid.org/0000-0001-6744-996X

Expertise: Bioinformatics, Cheminformatics, Metabolomics, Python, R, Software Engineering, Workflows

Tools: Metabolomics, Python, R, Workflows, Mass spectrometry, Chromatography

GTN Bot

Teams: Galaxy Training Network

Organizations: Galaxy

Expertise: AI, Workflows

Tools: Python

I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.

Denys Savchenko

Teams: ODA, EuroScienceGateway

Organizations: MMODA

https://orcid.org/0000-0002-7664-8490

Expertise: High Performance Computing, Scientific workflow developement, Software Engineering, astronomy

Tools: Galaxy, Jupyter notebook, Python, Workflows, Git

Mehdi Seifi

Teams: AI4Life OC

Organizations: ai4life

Expertise: AI, Software Engineering, Bioimage

Tools: Python

Cesar Gonzalez

Teams: COMPSs Tutorials

Organizations: Universitat Rovira i Virgili

https://orcid.org/0000-0002-6977-4413

Expertise: Computer Science, High Performance Computing, Grid Computing

Tools: Molecular Biology, Python, OmpSs, OpenCL

Rafael Terra

Teams: HP2NET - Framework for construction of phylogenetic networks on High Performance Computing (HPC) environment

Organizations: National Laboratory of Scientific Computing

https://orcid.org/0000-0002-3811-4527

Expertise: Bioinformatics, Scientific workflow developement, High Performance Computing

Tools: C/C++, Java, Python, R, Git, Parsl

Kateřina Storchmannová

Teams: Chemical Data Lab

Organizations: Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc

https://orcid.org/0000-0003-0285-6948

Expertise: Cheminformatics

Tools: Jupyter notebook, Python, R, Workflows

Shuxin Zhang

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-4715-9070

Expertise: Data Management, Database Development, Semantic Web, Ontology, Knowledge Graph

Tools: Python, SPARQL, RDF, OWL, RML, ShEx

Phuong Doan

Teams: ERGA Annotation, Bioinformatics Laboratory for Genomics and Biodiversity (LBGB)

Organizations: Genoscope

https://orcid.org/0000-0002-6621-9908

Expertise: Bioinformatics

Tools: Nextflow, Python, R, Genetic analysis, Single Cell analysis

Bram Danneels

Teams: EBP-Nor

Organizations: University of Bergen

https://orcid.org/0000-0001-7446-8325

Expertise: Genomics, Metagenomics, NGS, Python, evolution

Tools: Genomics, Python, Snakemake, Transcriptomics

Alvaro Gargantilla Becerra

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0003-0429-2365

Expertise: Bioengineering, Bioinformatics, Scientific workflow developement, Systems Biology, Workflows, Computer Aided Design

Tools: Databases, Jupyter notebook, Nextflow, Python, Transcriptomics, Computational and theoretical biology, SBML, Matlab

Johannes Kemper

Teams: WP7 - Earthquakes

Organizations: ETH Zürich

https://orcid.org/0000-0003-1841-9590

Expertise: Geophysics, Mathematical Modelling, Probabilistic Inversion, Theoretical Seismology

Tools: Python, C++, Mathematical Modelling

Russell Neches

Teams: Pitagora-Network

Organizations: Kyoto University

https://orcid.org/0000-0002-2055-8381

Expertise: phylogenomics, phylogenetics, evolution, Microbiology, numerical methods

Tools: Python, C, Snakemake

Hi! I'm Russell.

I'm a microbiologist who uses graph theory and machine learning to study the relationships that bacteria and archaea form with their host organisms, and lately giant viruses and their hosts. Or, I'm a computer scientist who builds software that uses concepts from evolution to extract knowledge about ecology from large datasets. Or, I'm a data scientist who uses Python to explore biological systems. Or, I'm a physicist that went rouge and defected to the squishy side of science. ...

Elisabetta Spinazzola

Teams: EOSC-Life WP3 OC Team, cross RI project, EOSC-Life WP3, Euro-BioImaging

Organizations: EOSC-Life, Euro-BioImaging

Expertise: Bioengineering, Bioinformatics, Computer Science, Data Management

Tools: Databases, Jupyter notebook, Python

Biomedical Engineer working on preclinical image dataset repository and cross researching RIs

Priyanka Surana

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-7167-0875

Expertise: Bioinformatics, Genomics, Scientific workflow developement

Tools: Nextflow, nf-core, Python, R

Dongyang Wang

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0001-6440-6980

Expertise: Bioinformatics, Genomics, Machine Learning

Tools: Python, R, Machine Learning

I am a Ph.D. student in Gong lab. I am interested in cancer genomics, including the mining of genetic risk determinants in cancer, functional prediction of genetic variants, tumor-associated molecular epidemiology, large-scale data integration, analysis, and mining, as well as the construction of bioinformatical data platforms.

Volodymyr Savchenko

Teams: ODA, EuroScienceGateway

Organizations: MMODA, EPFL

https://orcid.org/0000-0001-6353-0808

Expertise: astronomy, Data Management, high-performance computing, image analysis, Scientific workflow developement, Software Engineering

Tools: CWL, Machine Learning, Workflows, Python, Snakemake, Databases

Juan Caballero

Teams: MGnify

Organizations: EMBL-EBI

https://orcid.org/0000-0002-6160-3644

Expertise: Bioinformatics, Genomics, Metagenomics, Data Management

Tools: CWL, Jupyter notebook, Nextflow, Molecular Biology, Workflows, Microbiology, Transcriptomics, Perl, Python, R

Matous Elphick

Teams: Not specified

Organizations: Not specified

Expertise: image analysis, Software Engineering, Computer Science

Tools: Napari, Python

Elida Schneltzer

Teams: Applied Computational Biology at IEG/HMGU

Organizations: Helmholtz Zentrum München

https://orcid.org/0000-0003-4796-1661

Expertise: Software Engineering, Machine Learning, AI

Tools: Java, Jupyter notebook, Web services, Python

Stephen Moss

Teams: Not specified

Organizations: Not specified

https://orcid.org/0000-0002-1399-293X

Expertise: Bioinformatics, Computer Science, Data Management, Genetics, Genomics, Machine Learning, Metagenomics, NGS, Scientific workflow developement, Software Engineering

Tools: Databases, Galaxy, Genomics, Jupyter notebook, Machine Learning, Nextflow, nf-core, PCR, Perl, Python, R, rtPCR, Snakemake, Transcriptomics, Virology, Web, Web services, Workflows

Dad, husband and PhD. Scientist, technologist and engineer. Bibliophile. Philomath. Passionate about science, medicine, research, computing and all things geeky!

Andrea Zaliani