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With present computational capabilities and data volumes entering the Exascale Era, digital twins of the Earth system will be able to mimic the different system components (atmosphere, ocean, land, lithosphere) with unrivaled precision, providing analyses, forecasts, and what if scenarios for natural hazards and resources from their genesis phases and across their temporal and spatial scales. DT-GEO aims at developing a prototype for a digital twin on geophysical extremes including earthquakes, ...

Teams: WP5 - Volcanoes, WP6 - Tsunamis, WP7 - Earthquakes, WP8 - Anthropogenic geophysical extremes

Web page: https://dtgeo.eu/

No description specified

Teams: AI4Life OC

Web page: Not specified

The AquaInfra Project

The AquaINFRA project aims to develop a virtual environment equipped with FAIR multi-disciplinary data and services to support marine and freshwater scientists and stakeholders restoring healthy oceans, seas, coastal and inland waters. The AquaINFRA virtual environment will enable the target stakeholders to store, share, access, analyse and process research data and other research digital objects from their own discipline, across research infrastructures, disciplines and ...

Teams: Building spatio-temporal workflows in Galaxy

Web page: https://aquainfra.eu/

The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.

Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia

Web page: https://www.biocommons.org.au/

The BeYond-COVID project (BY-COVID) aims to make COVID-19 data accessible to scientists in laboratories but also to anyone who can use it, such as medical staff in hospitals or government officials.

Pursuing to go beyond SARS-CoV-2 data, the project will serve as the groundwork to make data from other infectious diseases open and accessible to everyone.

The BY-COVID project strives to simplify data access and reuse through four key ‘pillars’:

  1. Mobilise data: ensuring ...

Teams: BY-COVID Baseline Use Case: SARS-CoV-2 Vaccine(s) effectiveness in preventing SARS-CoV-2 infection

Web page: https://by-covid.org/

Biodiversity Genomics Europe, funded by Horizon Europe call HORIZON-CL6-2021-BIODIV-01-01, aims at aligning the resources and research agendas of both DNA barcoding and reference genome generation, thus opening the door for a true quantum leap in biodiversity genomics research in Europe.

Despite ground-breaking developments in both DNA barcoding and full genome sequencing, there remains a critical need to develop and strengthen functioning communities of practice ...

Teams: Vertebrate Genomes Pipelines in Galaxy, Biodiversity Genomics Europe (general)

Web page: https://biodiversitygenomics.eu/

The Biodiversity Digital Twin prototype provides advanced models for simulation and prediction capabilities, through practical use cases addressing critical issues related to global biodiversity dynamics.

BioDT exploits the LUMI Supercomputer and employs FAIR data combined with digital infrastructure, predictive modelling and AI solutions, facilitating evidence-based solutions for biodiversity protection and restoration.

Funded by Horizon Europe call HORIZON-INFRA-2021-TECH-01-01 101057437, the ...

Teams: BioDT Use Case 4.1.1.2 Ecosystem services, BioDT Use Case 4.1.1.1 Biodiversity dynamics, BioDT Use Case 4.1.2.2 DNA detected biodiversity, poorly known habitats, BioDT Use Case 4.1.2.1 Crop wild relatives and genetic resources for food security, BioDT Use Case 4.1.3.1 Invasive species, BioDT Use Case 4.1.3.2 Endangered species, BioDT Use Case 4.1.4.1 Disease outbreaks, BioDT Use Case 4.1.4.2 Pollinators, BioDT additional pipelines

Web page: https://biodt.eu/

BioExcel is the leading European Centre of Excellence for Computational Biomolecular Research. Established in 2015, the centre has grown into a major research and innovation hub for scientific computing. BioExcel develops some of the most popular applications for modelling and simulations of biomolecular systems. A broad range of additional pre-/post-processing tools are integrated with the core applications within user-friendly workflows and container solutions.

The software stack comes with ...

Teams: BioBB Building Blocks, BioExcel Best Practice Guides

Web page: https://bioexcel.eu/

No description specified

Teams: Lake Erken modelling setup

Web page: Not specified

The goal of COVID-19-Biohackathon 2020 (COVID-19-BH20) is to develop and gather computational tools that can be useful for studying the biology of the virus and the disease.

The COVID-19 Programme in Workflow Hub aims to gather workflows for the analysis of COVID-19 molecular biology data and their metadata. In this programme, all workflows and their metadata will be curated and made interoperable, reusable and reproducible. All workflows and their metadata will be easily accessible to everyone ...

Teams: Connor Lab, GalaxyProject SARS-CoV-2, InSaFLU, nf-core viralrecon, CWL workflow SARS-CoV-2, V-Pipe, Test team

Web page: https://github.com/virtual-biohackathons/covid-19-bh20

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