WF5_Data_Interpretation_Worklow
1.0

Workflow Type: Galaxy

Interpreting MaxQuant data using MSstats involves applying a rigorous statistical framework to glean meaningful insights from quantitative proteomic datasets

Associated Tutorial

This workflows is part of the tutorial Clinical Metaproteomics 5: Data Interpretation, available in the GTN

Thanks to...

Workflow Author(s): Subina Mehta

Tutorial Author(s): Subina Mehta, Katherine Do, Dechen Bhuming

Tutorial Contributor(s): Pratik Jagtap, Timothy J. Griffin, Bérénice Batut, Helena Rasche, Saskia Hiltemann, Björn Grüning, Subina Mehta

SEEK ID: https://workflowhub.eu/workflows/1433?version=1

Inputs

ID	Name	Description	Type
Annotation.txt	Annotation.txt	n/a	File
Comparison Matrix	Comparison Matrix	n/a	File
MaxQuant Evidence	MaxQuant Evidence	n/a	File
MaxQuant Protein Groups	MaxQuant Protein Groups	n/a	File
Quantified Peptides	Quantified Peptides	n/a	File

Steps

ID	Name	Description
5	Unipept	toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.1
6	Microbial Proteins	Grep1
7	Select	Grep1
8	MSstatsTMT	toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1
9	HUMAN-Proteins	Grep1
10	MSstatsTMT	toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy1