Find exons with the highest number of features 6.0
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Run on GalaxyGalaxy 101
Associated Tutorial
This workflows is part of the tutorial Galaxy Basics for genomics, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
Thanks to...
Workflow Author(s): Anton Nekrutenko, Helena Rasche, Armin Dadras
Tutorial Author(s): Saskia Hiltemann, Nicola Soranzo, Clemens Blank, Anton Nekrutenko, Björn Grüning, Anne Pajon, Helena Rasche
Tutorial Contributor(s): Armin Dadras, Helena Rasche, Teresa Müller, Björn Grüning, Saskia Hiltemann, Matthias Bernt, Anton Nekrutenko, Nicola Soranzo, Bérénice Batut, Gildas Le Corguillé, Cristóbal Gallardo, Nate Coraor, David López, Wolfgang Maier, Dave Clements, William Durand, Niall Beard, Maria Doyle
Funder(s): The Pennsylvania State University, Erasmus Medical Center, ELIXIR Europe, University of Freiburg, de.NBI
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Exons | Exons | Input exons file |
|
| Features | Features | Input features file |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | bedtools Intersect intervals | toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.31.1+galaxy0 |
| 3 | Datamash | toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0 |
| 4 | Sort | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/9.5+galaxy0 |
| 5 | Select first | toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/9.5+galaxy0 |
| 6 | Compare two Datasets | comp1 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| top_5_exons | top_5_exons | n/a |
|
Version History
master
Creators and Submitter
Views: 228 Downloads: 32 Runs: 0
Created: 2nd Jun 2025 at 10:55
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Organizations: Galaxy
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