Galaxy Training Network
OverviewThe Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
Space: Galaxy
SEEK ID: https://workflowhub.eu/projects/12
Public web page: https://training.galaxyproject.org
Organisms: Homo sapiens, Sars-cov-2
WorkflowHub PALs: No PALs for this Team
Team start date: 1st Sep 2017
TagsRelated items
Teams: Galaxy Training Network
Organizations: Galaxy
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Teams: usegalaxy-eu, Galaxy Training Network
Organizations: European Galaxy Team
https://orcid.org/0000-0002-5857-1477
Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network, ELIXIR Belgium
Organizations: ELIXIR Belgium, VIB
https://orcid.org/0000-0003-0522-5674
Teams: Galaxy Training Network
Organizations: Erasmus University Medical Centre
https://orcid.org/0000-0003-3803-468X
Post-doc at ErasmusMC, Galaxy Training Network (GTN) Lead
Teams: Galaxy Training Network
Organizations: European Galaxy Team
Teams: Galaxy Training Network
Organizations: University of Bradford
Teams: Galaxy Training Network
Organizations: University of Bradford
https://orcid.org/0009-0004-2454-5950
Teams: Galaxy Training Network, BioFAIR
Organizations: The Open University
https://orcid.org/0000-0001-6979-6930
Teams: Galaxy Training Network
Organizations: Muséum national d'Histoire naturelle
Teams: usegalaxy-eu, Galaxy Training Network, GalaxyProject SARS-CoV-2
Organizations: Galaxy
https://orcid.org/0000-0002-5987-8032
Failure is not an option.
借屍還魂
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network, usegalaxy-eu, Intergalactic Workflow Commission (IWC)
Web page: https://galaxyproject.org/
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Germany
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Belgium
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Web page: https://www.elixir-belgium.org/
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Netherlands
City: Rotterdam
Web page: Not specified
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France
City: Paris and others sites
Web page: https://www.mnhn.fr/en
ROR ID: Not specified
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Country: Germany
City: Leipzig
Web page: https://www.ufz.de/
ROR ID: Not specified
Department: Not specified
Country: France
City: Not specified
Web page: https://www.irisa.fr/
ROR ID: Not specified
Department: Not specified
Country: Not specified
City: Paris
Web page: https://www.mnhn.fr
ROR ID: Not specified
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United Kingdom
City: Milton Keynes
Web page: https://open.ac.uk
ROR ID: Not specified
Department: Not specified
Country: United Kingdom
City: Bradford
Web page: Not specified
This Workflow transcribes a video or audio with multiple speakers. After transcription, it allocates the names of the speakers and groups and cleans passages from the two main speakers for further analysis.
Associated Tutorial
This workflows is part of the tutorial Transcribing Audio and Video files with Automated Speech Recognition, available in the ...
Train and evaluate a HANCOCK recurrence model with Multimodal Learner
Associated Tutorial
This workflows is part of the tutorial Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK, available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Associated Tutorial
This workflows is part of the tutorial Introduction to Galaxy as an RDM platform, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Basic workflow to upload images into OMERO together with ROIs
Associated Tutorial
This workflows is part of the tutorial Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy, available in the GTN
Features
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Segmentation of Anatomical Structures in Medical 3-D Images, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
An example how ISCC codes can be used to verify image analysis steps
Associated Tutorial
This workflows is part of the tutorial Content Tracking and Verification in Galaxy Workflows with ISCC-SUM, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
This workflow is executing a BiaPy workflow using a YAML file where the model selection is predefined.
Associated Tutorial
This workflows is part of the tutorial Execute a BiaPy workflow in Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Associated Tutorial
This workflows is part of the tutorial GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
Associated Tutorial
This workflows is part of the tutorial M. tuberculosis Variant Analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Predict variants and drug resistance from M. tuberculosis sequence samples (Illumina)
Associated Tutorial
This workflows is part of the tutorial M. tuberculosis Variant Analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial De Bruijn Graph Assembly, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data), available in the GTN
Features
- Includes Galaxy Workflow Tests ...
Genome Assembly of MRSA using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data, available in the GTN
Features
- Includes Galaxy Workflow Tests
...
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
Associated Tutorial
This workflows is part of the tutorial Quality and contamination control in bacterial isolate using Illumina MiSeq Data, available in the GTN
Features
- Includes [Galaxy Workflow ...
Mapping
Associated Tutorial
This workflows is part of the tutorial Mapping, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Formation of the Super-Structures on the Inactive X, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a [Galaxy Workflow ...
atac-seq
Associated Tutorial
This workflows is part of the tutorial ATAC-Seq data analysis, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
Associated Tutorial
This workflows is part of the tutorial Remove contamination and host reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report ...
