The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
Space: This Team is not associated with a Space
SEEK ID: https://workflowhub.eu/projects/12
Public web page: https://training.galaxyproject.org
Organisms: Homo sapiens, Sars-cov-2
WorkflowHub PALs: No PALs for this Team
Team start date: 1st Sep 2017
Teams: GalaxyProject SARS-CoV-2, Galaxy Training Network
Organizations: ELIXIR Belgiumhttps://orcid.org/0000-0003-0522-5674
Teams: Galaxy Training Network
Organizations: Erasmus University Medical Centrehttps://orcid.org/0000-0003-3803-468X
Expertise: Genomics, amplicon analysis, Microbiology
Post-doc at ErasmusMC, Galaxy Training Network (GTN) Lead
Teams: usegalaxy-eu, Galaxy Training Network, GalaxyProject SARS-CoV-2
Abstract CWL Automatically generated from the Galaxy workflow file: Copy of Genome-wide alternative splicing analysis
Genome-wide alternative splicing analysis v.2.
This workflow correspond to the Genome-wide alternative splicing analysis training. It allows to analyze isoform switching by making use of IsoformSwitchAnalyzeR.
To discover causal mutations of inherited diseases it’s common practice to do a trio analysis. In a trio analysis DNA is sequenced of both the patient and parents. Using this method, it’s possible to identify multiple inheritance patterns. Some examples of these patterns are autosomal recessive, autosomal dominant, and de-novo variants, which are represented in the figure below. To elaborate, the most left tree shows an autosomal dominant inhertitance pattern where the offspring inherits a faulty ...
Creator: Jasper Ouwerkerk
Submitter: Helena Rasche
Workflow for the GTN training "Antibiotic resistance detection"
Creators: Saskia Hiltemann, Willem de Koning
Submitter: Saskia Hiltemann
The tutorial for this workflow can be found on Galaxy Training Network
Creator: Anne Fouilloux
Submitter: Bert Droesbeke