Workflow Type: Galaxy
Open
Creators and Submitter
Attributions
Collections
Total size: 30.4 KB
Performs scaffolding using Bionano Data. Part of VGP assembly pipeline.
Could not render the workflow diagram.
Inputs
ID | Name | Description | Type |
---|---|---|---|
Bionano Data | n/a | Bionano data in Cmap format. |
|
Conflict resolution files | n/a | Input a conflict resolution file indicating which NGS and BioNano conflicting contigs to be cut [optional] (-M) |
|
Estimated genome size - Parameter File | n/a | Parameter file generated in the VGP Hifiasm workflow. Estimated reference genome size (in bp) for computing NGx statistics |
|
Hifiasm Purged Assembly | n/a | The assembly from "VGP-Hifiasm" workflow. |
|
Pacbio trimmed reads | n/a | n/a |
|
Steps
ID | Name | Description |
---|---|---|
10_Quast | n/a | n/a |
3_Input parameter | n/a | n/a |
6_Parse parameter value | n/a | n/a |
7_Bionano Hybrid Scaffold | n/a | n/a |
8_Concatenate datasets | n/a | n/a |
9_Busco | n/a | n/a |
Version History
Version 1 (earliest) Created 5th Apr 2022 at 23:21 by Cristóbal Gallardo
Initial commit
Open
master
ec6ad8e
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Creator
Submitter
Activity
Views: 2713 Downloads: 158
Created: 5th Apr 2022 at 23:21
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
None
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
Powered by
(v.1.15.0)
About WorkflowHub |
Acknowledgements |
Credits | Terms & Conditions
| Privacy Policy
| Cite us | Contact us
Copyright © 2008 - 2024
The University of Manchester and
HITS gGmbH