Metaproteomics_GTN 7.0
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Run on GalaxyMetaproteomics tutorial
Associated Tutorial
This workflows is part of the tutorial Metaproteomics tutorial, available in the GTN
Thanks to...
Tutorial Author(s): Timothy J. Griffin, Pratik Jagtap, James Johnson, Clemens Blank, Subina Mehta
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Dataset Collection of Bering Strait MGF Files | #main/Dataset Collection of Bering Strait MGF Files | n/a |
|
| Gene Ontology Terms (Selected) | #main/Gene Ontology Terms (Selected) | n/a |
|
| Sixgill generated protein FASTA File | #main/Sixgill generated protein FASTA File | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
| 4 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3 |
| 5 | Query Tabular Select Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 6 | Unipept pept2prot | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
| 7 | Unipept lca | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
| 8 | Go Pop2Prot DB | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 9 | Genera | PSMs | Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 10 | GO Terms: Biological Processes | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
| 11 | GO Terms: Molecular Functions | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
| 12 | GO Terms: Cellular Localization | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Peptide Shaker on input dataset(s): mzidentML file | #main/Peptide Shaker on input dataset(s): mzidentML file | n/a |
|
| Search GUI on input dataset(s) | #main/Search GUI on input dataset(s) | n/a |
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| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
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| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
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| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 39 Downloads: 4 Runs: 0
Created: 2nd Jun 2025 at 10:53
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