Metaproteomics_GTN 7.0
Visit source
Download RO-Crate
Run on GalaxyMetaproteomics tutorial
Associated Tutorial
This workflows is part of the tutorial Metaproteomics tutorial, available in the GTN
Thanks to...
Tutorial Author(s): Timothy J. Griffin, Pratik Jagtap, James Johnson, Clemens Blank, Subina Mehta
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Dataset Collection of Bering Strait MGF Files | #main/Dataset Collection of Bering Strait MGF Files | n/a |
|
| Gene Ontology Terms (Selected) | #main/Gene Ontology Terms (Selected) | n/a |
|
| Sixgill generated protein FASTA File | #main/Sixgill generated protein FASTA File | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | Search GUI | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1 |
| 4 | Peptide Shaker | toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3 |
| 5 | Query Tabular Select Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 6 | Unipept pept2prot | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
| 7 | Unipept lca | toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.3.0 |
| 8 | Go Pop2Prot DB | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 9 | Genera | PSMs | Peptides | toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0 |
| 10 | GO Terms: Biological Processes | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
| 11 | GO Terms: Molecular Functions | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
| 12 | GO Terms: Cellular Localization | toolshed.g2.bx.psu.edu/repos/iuc/sqlite_to_tabular/sqlite_to_tabular/2.0.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Peptide Shaker on input dataset(s): mzidentML file | #main/Peptide Shaker on input dataset(s): mzidentML file | n/a |
|
| Search GUI on input dataset(s) | #main/Search GUI on input dataset(s) | n/a |
|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
|
| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
|
| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
|
| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
|
| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
|
| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
master
Creators and Submitter
Views: 219 Downloads: 27 Runs: 0
Created: 2nd Jun 2025 at 10:53
Tags AttributionsNone
Related items
Teams: Galaxy Training Network
Organizations: Galaxy
I'm a bot managed by @hexylena to upload workflows from the Galaxy Training Network to the WorkflowHub. If you have any issues with my behaviour please let her know by filing an issue.
Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biological research.
- Accessible: Users can easily run tools without writing code or using the CLI; all via a user-friendly web interface.
- Reproducible: Galaxy captures all the metadata from an analysis, making it completely reproducible.
- Transparent: Users share and publish analyses via interactive pages that can enhance analyses with user annotations.
- Scalable: Galaxy can run ...
Teams: Galaxy Training Network
Web page: https://galaxyproject.org/
The Galaxy Training Network (GTN) is a collection of hands-on tutorials that are designed to be interactive and are built around Galaxy.
These tutorials can be used for learning and teaching how to use Galaxy for general data analysis, as well as a wide array of hands-on tutorials covering specific domains such as assembly, RNA-Seq analysis, deep learning, climate analysis, and more!
