Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Analyse HeLa fluorescence siRNA screen, available in the GTN

Features

Thanks to...

Workflow Author(s): Till Korten, Leonid Kostrykin

Tutorial Author(s): Thomas Wollmann, Leonid Kostrykin

Tutorial Contributor(s): Helena Rasche, Saskia Hiltemann, Björn Grüning, Leonid Kostrykin, Thomas Wollmann

Funder(s): ELIXIR Europe

gtn star logo followed by the word workflows

Steps

ID Name Description
2 Filter 2-D image toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/1.12.0+galaxy1
3 Threshold image toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.18.1+galaxy3
4 Convert binary image to label map toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.5+galaxy0
5 Extract image features toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0
6 Filter label map by rules toolshed.g2.bx.psu.edu/repos/imgteam/2d_filter_segmentation_by_features/ip_2d_filter_segmentation_by_features/0.0.1-4
7 Extract image features toolshed.g2.bx.psu.edu/repos/imgteam/2d_feature_extraction/ip_2d_feature_extraction/0.18.1+galaxy0

Version History

6.0 (earliest) Created 2nd Jun 2025 at 10:56 by GTN Bot

Added/updated 4 files


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Created: 2nd Jun 2025 at 10:56

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