Workflow Type: Galaxy
MaxQuant and MSstats for the analysis of TMT data
Associated Tutorial
This workflows is part of the tutorial MaxQuant and MSstats for the analysis of TMT data, available in the GTN
Thanks to...
Tutorial Author(s): Klemens Fröhlich, Melanie Föll, Matthias Fahrner
Inputs
ID | Name | Description | Type |
---|---|---|---|
Experimental design template | #main/Experimental design template | n/a |
|
Input Dataset Collection | #main/Input Dataset Collection | n/a |
|
MSstats annotation file | #main/MSstats annotation file | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | MaxQuant | toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.17.0+galaxy2 |
4 | MSstatsTMT | toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_10 | #main/_anonymous_output_10 | n/a |
|
_anonymous_output_11 | #main/_anonymous_output_11 | n/a |
|
_anonymous_output_12 | #main/_anonymous_output_12 | n/a |
|
_anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
_anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
_anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
_anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
_anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
_anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History

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Views: 38 Downloads: 3 Runs: 0
Created: 2nd Jun 2025 at 10:51


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