A collection of workflows and pipelines developed as part of the ERGA consortium
Space: ERGA
SEEK ID: https://workflowhub.eu/projects/163
Public web page: https://www.erga-biodiversity.eu/
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 2nd May 2023
Related items
Teams: ERGA Assembly
Organizations: IZW
Teams: ERGA Assembly
Organizations: IZW
Teams: ERGA Assembly, ERGA Annotation
Organizations: University of Lausanne

Teams: ERGA Assembly, ERGA Annotation
Web page: https://www.erga-biodiversity.eu/
CLAWS (CNAG's Long-read Assembly Workflow in Snakemake)
Snakemake Pipeline used for de novo genome assembly @CNAG. It has been developed for Snakemake v6.0.5.
It accepts Oxford Nanopore Technologies (ONT) reads, PacBio HFi reads, illumina paired-end data, illumina 10X data and Hi-C reads. It does the preprocessing of the reads, assembly, polishing, purge_dups, scaffodling and different evaluation steps. By default it will preprocess the reads, run Flye + Hypo + purge_dups + yahs and evaluate ...
Type: Snakemake
Creators: Jessica Gomez-Garrido, Fernando Cuz (CNAG), Francisco Camara (CNAG), Tyler Alioto (CNAG)
Submitter: Jessica Gomez-Garrido