Somatic-ShortV-nf Version 1
View on GitHub
Download RO CrateThis is a Nextflow implementaion of the GATK Somatic Short Variant Calling workflow. This workflow can be used to discover somatic short variants (SNVs and indels) from tumour and matched normal BAM files following GATK's Best Practices Workflow. The workflowis currently optimised to run efficiently and at scale on the National Compute Infrastructure, Gadi.
Version History
main @ 495dafb (earliest) Created 20th Dec 2023 at 01:12 by Georgina Samaha
Build skeleton template
Frozen
main495dafb
Creators and Submitter
Views: 429
Created: 20th Dec 2023 at 01:12
Last updated: 20th Dec 2023 at 01:16
Tags AttributionsNone
Related items
Teams: Sydney Informatics Hub
Organizations: The University of Sydney
Teams: Sydney Informatics Hub
Organizations: Australian BioCommons
https://orcid.org/0000-0003-0419-1476
Teams: Sydney Informatics Hub
Organizations: The University of Sydney
https://orcid.org/0000-0001-8449-1502
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Teams: Australian BioCommons, QCIF Bioinformatics, Pawsey Supercomputing Research Centre, Sydney Informatics Hub, Janis, Melbourne Data Analytics Platform (MDAP), Galaxy Australia
Web page: https://www.biocommons.org.au/
The Australian BioCommons enhances digital life science research through world class collaborative distributed infrastructure. It aims to ensure that Australian life science research remains globally competitive, through sustained strategic leadership, research community engagement, digital service provision, training and support.
Space: Australian BioCommons
Public web page: https://www.biocommons.org.au/
The Sydney Informatics Hub is a Core Research Facility of The University of Sydney. We work towards enabling excellence in data and compute intensive research. We provide support, training, and expertise in statistics, data science, artificial intelligence, bioinformatics, software engineering, simulation, visualisation, and research computing. We are creating reusable workflows for bioinformatics on Australia's national supercompute resources & commercial cloud, as an official node of the ...
Space: Australian BioCommons
Public web page: https://www.sydney.edu.au/sydney-informatics-hub
