Somatic-ShortV-nf
Version 1

Workflow Type: Nextflow
Work-in-progress

This is a Nextflow implementaion of the GATK Somatic Short Variant Calling workflow. This workflow can be used to discover somatic short variants (SNVs and indels) from tumour and matched normal BAM files following GATK's Best Practices Workflow. The workflowis currently optimised to run efficiently and at scale on the National Compute Infrastructure, Gadi.

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main @ 495dafb (earliest) Created 20th Dec 2023 at 01:12 by Georgina Samaha

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Deshpande, N., Chew, T., Willet, C., & Samaha, G. (2023). Somatic-ShortV-nf. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.691.1
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Created: 20th Dec 2023 at 01:12

Last updated: 20th Dec 2023 at 01:16

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