Martin Beracochea
SEEK ID: https://workflowhub.eu/people/27
Location:
United Kingdom
Expertise: Not specified
Tools: Not specified
https://orcid.org/0000-0003-3472-3736
Their tagsRelated items
MGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
Space: This Team is not associated with a Space
Public web page: Not specified
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VIRify
VIRify is a recently developed pipeline for the detection, annotation, and taxonomic classification of viral contigs in metagenomic and metatranscriptomic assemblies. The pipeline is part of the repertoire of analysis services offered by MGnify. VIRify’s taxonomic classification relies on the detection of taxon-specific profile hidden Markov models (HMMs), built upon a set of 22,014 orthologous protein domains and referred to as ViPhOGs.
A nextflow implementation of the VIRify pipeline for
...
Type: Nextflow
Creators: Martin Beracochea, Martín Beracochea, Martin Hölzer, Alexandre Almeida, Guillermo Rangel-Pineros and Ekaterina Sakharova
Submitter: Laura Rodriguez-Navas
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VIRify
VIRify is a recently developed pipeline for the detection, annotation, and taxonomic classification of viral contigs in metagenomic and metatranscriptomic assemblies. The pipeline is part of the repertoire of analysis services offered by MGnify. VIRify’s taxonomic classification relies on the detection of taxon-specific profile hidden Markov models (HMMs), built upon a set of 22,014 orthologous protein domains and referred to as ViPhOGs.
VIRify was implemented in CWL.
What do I need?
The
...
Type: Common Workflow Language
Creators: Martin Beracochea, Martín Beracochea, Martin Hölzer, Alexandre Almeida, Guillermo Rangel-Pineros and Ekaterina Sakharova
Submitter: Laura Rodriguez-Navas
