SEEK ID: https://workflowhub.eu/people/604
Location:
United Kingdom
ORCID:
https://orcid.org/0000-0003-2949-6719
Joined: 14th Nov 2023
Expertise: Not specified
Tools: Not specified

Related items
The Tree of Life Programme uses DNA sequencing and cellular technologies to investigate the diversity and origins of life on Earth. Our research covers all eukaryotic organisms, which means all complex life with a nucleus in their cells – that is every animal, plant, fungi and protist on the planet.
We use Nextflow and are building our own pipelines following the nf-core methodology. All our pipelines are on GitHub, https://github.com/sanger-tol, and are then listed and documented at ...
Teams: Tree of Life Genome Assembly, Tree of Life Genome Analysis
We develop a suite of analysis pipelines that will run on every genome produced in Tree of Life, providing a central database of core results available for all.
Space: Sanger Tree of Life
Public web page: Not specified
Organisms: Not specified
We gather the high throughput sequence data as it is generated, run quality control analysis to make sure the data is good quality and from the expected species. We assemble the long read sequence data into long contiguous pieces, then use further long-range sequencing data to scaffold the data into chromosome scale blocks. We then manually curate the assembly and submit it to INSDC.
We also develop automated tools and pipelines to enable the high throughput required for ever growing number of ...
Space: Sanger Tree of Life
Public web page: Not specified
Organisms: Not specified
Type: Nextflow
Creators: Damon-Lee Pointon, Mahesh Panchel, Yumi Sims, Will Eagles, Matthieu Muffato, Solenne Correard, Josie Paris
Submitter: Damon-Lee Pointon