MGnify
OverviewMGnify (formerly known as EBImetagenomics) is a free resource for the assembly, analysis, archiving and browsing all types of microbiome derived sequence data.
Space: This Team is not associated with a Space
SEEK ID: https://workflowhub.eu/projects/9
Public web page: Not specified
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 8th Jun 2020
Related items
https://orcid.org/0000-0003-3472-3736
Computer Engineer in Barcelona Supercomputing Center (BSC)
VIRify
VIRify is a recently developed pipeline for the detection, annotation, and taxonomic classification of viral contigs in metagenomic and metatranscriptomic assemblies. The pipeline is part of the repertoire of analysis services offered by MGnify. VIRify’s taxonomic classification relies on the detection of taxon-specific profile hidden Markov models (HMMs), built upon a set of 22,014 orthologous protein domains and referred to as ViPhOGs.
VIRify was implemented in CWL.
What do I need?
The
...
Type: Nextflow
Creators: Martin Beracochea, Martin Hölzer, Alexandre Almeida, Guillermo Rangel-Pineros and Ekaterina Sakharova
Submitter: Laura Rodriguez-Navas
Download
VIRify
VIRify is a recently developed pipeline for the detection, annotation, and taxonomic classification of viral contigs in metagenomic and metatranscriptomic assemblies. The pipeline is part of the repertoire of analysis services offered by MGnify. VIRify’s taxonomic classification relies on the detection of taxon-specific profile hidden Markov models (HMMs), built upon a set of 22,014 orthologous protein domains and referred to as ViPhOGs.
VIRify was implemented in CWL.
What do I need?
The
...
Type: Common Workflow Language
Creators: Martin Beracochea, Martin Hölzer, Alexandre Almeida, Guillermo Rangel-Pineros and Ekaterina Sakharova
Submitter: Laura Rodriguez-Navas
