ERGA Annotation
OverviewA collection of workflows designed to annotate elements of the genome. These include repeat regions, protein-coding genes, ncRNA, miRNA.
Space: ERGA
SEEK ID: https://workflowhub.eu/projects/191
Public web page: Not specified
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 7th Sep 2023
Related items
Teams: ERGA Annotation
Organizations: Genoscope
Teams: ERGA Assembly, ERGA Annotation
Organizations: University of Lausanne
https://orcid.org/0000-0003-4771-6113
Teams: ERGA Assembly, ERGA Annotation
Web page: https://www.erga-biodiversity.eu/
Country: 
France
City: Paris
Web page: https://jacob.cea.fr/drf/ifrancoisjacob/Pages/Departements/Genoscope.aspx
ERGA Protein-coding gene annotation workflow.
Adapted from the work of Sagane Joye:
https://github.com/sdind/genome_annotation_workflow
Prerequisites
The following programs are required to run the workflow and the listed version were tested. It should be noted that older versions of snakemake are not compatible with newer versions of singularity as is noted here: https://github.com/nextflow-io/nextflow/issues/1659.
conda v 23.7.3
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