Jasper Koehorst

About Jasper Koehorst:
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SEEK ID: https://workflowhub.eu/people/46

Location:  Netherlands

Expertise: Not specified

Tools: Not specified

ORCID: Not specified

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An open infrastructure for exploring new horizons for research on microbial communities.

Space: Independent Teams

Public web page: https://m-unlock.nl

Start date: 1st Sep 2020

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Country:  Netherlands

City: Not specified

Web page: https://m-unlock.nl

Metagenomics workflow
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Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflowquality.cwl: FastQC (control) fastp (trimming) - Kraken2 (Taxonomic Read Classification - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - samtobam (sam to indexed bam) - metabatContigDepths (jgisummarizebamcontig_depths) - MetaBat2 (binning) - SAPP (bin annotation)

Type: Common Workflow Language

Creators: None

Submitter: Jasper Koehorst

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NGTax
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Work-in-progress

Amplicon analysis workflow using NG-Tax

Type: Common Workflow Language

Creators: None

Submitter: Jasper Koehorst

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