A community effort to collect a curated set of analysis pipelines built using Nextflow.
Space: nf-core
SEEK ID: https://workflowhub.eu/projects/15
Public web page: https://nf-co.re
Organisms: No Organisms specified
WorkflowHub PALs: No PALs for this Team
Team created: 22nd Jul 2020
Related items
Teams: nf-core
Organizations: National University of Ireland, Galway
Expertise: Bioinformatics
Bioinformatician in Stockholm, Sweden. Lead for nf-core and MultiQC projects.
A community effort to collect a curated set of analysis pipelines built using Nextflow.
Teams: nf-core
Web page: https://nf-co.re
nf-core/circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Introduction
nf-core/circrna is a best-practice analysis pipeline for the quantification, miRNA target prediction and differential expression analysis of circular RNAs in paired-end RNA sequencing data.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes ...
metaboigniter is bioinformatics pipeline for pre-processing of mass spectrometry-based metabolomics data. It can be used to perform quantification and identification based on MS1 and MS2 data. The backbone of pipeline is based on XCMS, OpenMS, CAMERA, MSnbase, MetFrag, CSIFingerID, CFM-ID, and several other customized tools to noise filtering, quantification and identification both for library and in-silico identification. Please go on to this page to learn how to use the workflow
The pipeline ...
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control.