A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Web page: Not specified
Funding details:Related items
Teams: UX trial team
Organizations: The University of Manchester
Teams: IBISBA Workflows, nf-core viralrecon
Organizations: The University of Manchester
Teams: NanoGalaxy
Organizations: Erasmus University Medical Centre

Space: Independent Teams
Public web page: Not specified
Organisms: Not specified
Workflows from the Industrial Biotechnology Innovation and Synthetic Biology Accelerator (IBISBA 1.0) project, which is funded by the European Union Horizon 2020 program INRAIA-02 under grant agreement 730976.
The workflows also appear on https://hub.ibisba.eu
Space: Independent Teams
Public web page: https://www.ibisba.eu
Organisms: Homo sapiens, SARS-CoV-2
An open infrastructure for exploring new horizons for research on microbial communities.
Organisms: Not specified
A team to try the workflow hub and register workflows
Space: Independent Teams
Public web page: Not specified
Organisms: Not specified
Collection of workflows and tools to facilitate the assembly of (Italian) SARS-CoV-2 genomes and deposition of relevant data in INDSC sequence databases
Space: Independent Teams
Public web page: Not specified
Organisms: Not specified
Work-in-progress
Workflow for Metagenomics from raw reads to annotated bins.
Steps:
workflow_quality.cwl:
FastQC (control)
fastp (trimming)
Kraken2 (Taxonomic Read Classification
SPAdes (Assembly)
QUAST (Assembly quality report)
BBmap (Read mapping to assembly)
samtobam (sam to indexed bam)
metabatContigDepths (jgisummarizebamcontigdepths)
MetaBat2 (binning)
Work-in-progress
Workflow for read quality control and trimming.
Steps:
FastQC (read quality control)
fastp (read quality trimming)
bbduk used for rrna filtering
Work-in-progress
Workflow for NonSpliced RNAseq data with multiple aligners.
Steps:
workflow_quality.cwl:
FastQC (control)
fastp (trimming)
bowtie2 (read mapping)
samtosorted-bam
featurecounts (transcript read counts)
kallisto (transcript [pseudo]counts)
Work-in-progress
Workflow for Spliced RNAseq data
Steps:
workflow_quality.cwl:
FastQC (Read Quality Control)
fastp (Read Trimming)
STAR (Read mapping)
featurecounts (transcript read counts)
kallisto (transcript [pseudo]counts)