Independent Teams
A space managed by WorkflowHub administrators for teams that don't want/need to manage their own space.
Web page: Not specified
Funding details: Related items
Teams: IBISBA Workflows, nf-core viralrecon
Organizations: The University of Manchester
Teams: NanoGalaxy
Organizations: Erasmus University Medical Centre
https://orcid.org/0000-0002-4594-8423
Teams: IBISBA Workflows
Organizations: Unspecified
Space: Independent Teams
Public web page: Not specified
An open infrastructure for exploring new horizons for research on microbial communities.
Space: Independent Teams
Public web page: http://covid-19.genenetwork.org/
Workflows from the Industrial Biotechnology Innovation and Synthetic Biology Accelerator (IBISBA 1.0) project, which is funded by the European Union Horizon 2020 program INRAIA-02 under grant agreement 730976.
The workflows also appear on https://hub.ibisba.eu
Space: Independent Teams
Public web page: https://www.ibisba.eu
Workflows forge of the Bioinformatics Core Facility @ the Institute of Molecular Biology (Mainz)
Space: Independent Teams
Public web page: https://gitlab.rlp.net/imbforge/NGSpipe2go
Download
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflowquality.cwl: FastQC (control) fastp (trimming) - Kraken2 (Taxonomic Read Classification - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - samtobam (sam to indexed bam) - metabatContigDepths (jgisummarizebamcontig_depths) - MetaBat2 (binning) - SAPP (bin annotation)
Work-in-progress
Amplicon analysis workflow using NG-Tax
Work-in-progress
Type: Common Workflow Language
Creators: Stian Soiland-Reyes, Michael R. Crusoe, Pjotr Prins, Andrea Guarracino, Peter Amstutz, Thomas Liener, Adam Novak, Bonface Munyoki, Tazro Inutano Ohta, Michael Heuer
Submitter: Michael R. Crusoe
Stable
scRNA-Seq pipelines
Here we forge the tools to analyze single cell RNA-Seq experiments. The analysis workflow is based on the Bioconductor packages scater and scran as well as the Bioconductor workflows by Lun ATL, McCarthy DJ, & Marioni JC [*A step-by-step workflow for low-level analysis of single-cell RNA-seq ...
Stable
scRNA-Seq pipelines
Here we forge the tools to analyze single cell RNA-Seq experiments. The analysis workflow is based on the Bioconductor packages scater and scran as well as the Bioconductor workflows by Lun ATL, McCarthy DJ, & Marioni JC [*A step-by-step workflow for low-level analysis of single-cell RNA-seq ...
