GermlineStructuralV-nf
Version 1

Workflow Type: Nextflow

GermlineStructuralV-nf is a pipeline for identifying structural variant events in human Illumina short read whole genome sequence data. GermlineStructuralV-nf identifies structural variant and copy number events from BAM files using Manta, Smoove, and TIDDIT. Variants are then merged using SURVIVOR, and annotated by AnnotSV. The pipeline is written in Nextflow and uses Singularity/Docker to run containerised tools.

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main @ 45954a4 (earliest) Created 31st Jan 2023 at 23:40 by Georgina Samaha

Merge pull request #15 from Sydney-Informatics-Hub/betarelease

Beta release complete


Frozen main 45954a4
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Samaha, G., & Chew, T. (2023). GermlineStructuralV-nf. WorkflowHub. https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.431.1
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Created: 31st Jan 2023 at 23:40

Last updated: 18th Dec 2023 at 05:36

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